Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0946 ATGAACAGAACTTCACAAGAAACGGATAAGATGATCCGATATGGATCCGGATCATTTTCCATGGATACATACGAATTAATGGATTTTTACTTTCCTCAACAACTCTTCACTGTTGAAGAAACCTGGCTCAAACTCACTTCTTCTCTTTTTTCCTTCTTTTCTTCTCAAGGCCAAAACATCGTTTCTCAGGTGAAAAATGAATTTGGAAACTATGTATTGTCACTTGATTTTCAGCAGCTCAAAAATACGTGTCATGTTGAGGAGTTTTATGAAATGTTAATGGAGAAGCCTAAAATTGCTCTCTTATGCATGAGTGCTGCCATTCATAAGGTTCTGCTTTCTGAATGGGAGAATGACAAGCTGGAGCTTGCTGCAAAAGTAGACATCCGTCTTCATAACTGTCCTGAAACTATGATTGCCCTGAAGAACTTAAAAGCAGCTTATATAGACAAGCTTGTCTCAGTGCGTGGTACCACTGTGAAAGCCAGCACTGTTAGACCTCTTGTGGTAGAAATGAGTTTTGAATGCAGTAAGTGCAAACAAAGTATTACACGCATATTTCCTGACGGAAAATATTCACCACCATCAGCTTGCAATTTGAATGGCTGCAAAAGCAAAATCTTCAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAGAAAATAAGAGTTCAAGAATTATTAAAGCATGAAGATCATGAGGAAGGACGAGTGCCTCGAACAGTGGAATGTGAACTTACCCAAGATCTCGTTGATTCATGCATTCCTGGAGATGTGGTGACGGTTGCAGGAATTATCAGAGGAATTAACAATTACATGGATATTGGAGGAGGAAAGTCGAAGAACAGAAACCAAGGATTTTACTATTTGTATCTTGAAGCTGTATCCATAATAAATTCAAAGTCACAGTCCATATCTGATGATTCACAAGACTCTAATGCAAATGCAAGACCAACTGAGCTGTCTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAATTTGCGGGGGAGCACCGTTCAGATTTATTTCGGCAAATCCTTCACTCTATATGCCCTTCCATCTATGGGCACGAGCTTGTTAAAGCTGGGATAACTCTAGCATTATTTGGCGGTGTACGAAAGCATTCTATGGATCAGAATAAGGTTCCTGTGAGGGGAGATATTCATGTCTTAATTGTAGGTGATCCTGGTCTAGGTAAGAGCCAGTTGTTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATTTATGTTTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTTAAGGATCCTATGACAAATGACTATGCTTTTGAGGCAGGTGCTATGGTGCTGGCTGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGACCTCAGAGCATCAGGCTTTGCTGGAGGCAATGGAGCAACAATGTGTCTCTATTGCAAAGGCAGGATTGGTAGCTAGTTTATCATCCCGGACTTCTGTCTTAGCAGCTGCAAACCCCGTCGGTGGTCATTATAACCGGGCAAAAACTGTAAATGAAAATTTAAAAATGAGCGCTGCACTATTGTCCCGTTTTGATTTAATTTTCATATTGCTGGACAAGCCTGATGAACTTTTGGACAAGCGAGTTTCGGAGCACATTATGTCGCTTCATGCTGGGAGCGGGCAACTCTCACATGCATCTAAAAAGCGACGTGGAGATCCACCTTCTGCATCACAGAATGTTGAAGTGGTAGATTTGAGTGTTAGATCTGGTTCTTTAATTTCAAGGTTGAAACTTGACAGACGAAAAGATAGCAAATTCGCTCCATTACCCGGTCAACTTCTTCGCAAATACATTGCTTATGCAAGGAGTTTTGTCTTTCCCAGGATGTCCAAGCCAGCAGCAGATATCATACAAAATTTTTACCTAAAACTTAGAGATCATAACGTTTCGGCTGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGTGCTCGGCTGGACTTGAGAGTAGAAATAACGGCCCAAGATGCAATGGATGTTGTTGAAATCATGAAGGAATCCCTGTATGATAAATATGTTGATGAACACGGTGTTGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAGCAGAAAGAAGCAAAACGCTTTCTAAATGCCCTCAATAAGCAATCAGAGCTGGAACAGAAAGATTGTTTTTCAGTATCTGAAATATACAGTCTGGCAGATAGGATTTCCTTGAAAGTACCTGATATGGATACTTTCATTGAAAATTTGAACATCGTTGGTTATCTAATCAAAAAAGGACCAAAAACATACCAGGTGTTATCCTCTTCTTACTCGCGGAGCCAATCATCTAAGTCAAGGGGCTAA 2400 0.4071 MNRTSQETDKMIRYGSGSFSMDTYELMDFYFPQQLFTVEETWLKLTSSLFSFFSSQGQNIVSQVKNEFGNYVLSLDFQQLKNTCHVEEFYEMLMEKPKIALLCMSAAIHKVLLSEWENDKLELAAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTTVKASTVRPLVVEMSFECSKCKQSITRIFPDGKYSPPSACNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKHEDHEEGRVPRTVECELTQDLVDSCIPGDVVTVAGIIRGINNYMDIGGGKSKNRNQGFYYLYLEAVSIINSKSQSISDDSQDSNANARPTELSDLFSFSSKDLEFVVKFAGEHRSDLFRQILHSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVLIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDPMTNDYAFEAGAMVLADSGLCCIDEFDKMTSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELLDKRVSEHIMSLHAGSGQLSHASKKRRGDPPSASQNVEVVDLSVRSGSLISRLKLDRRKDSKFAPLPGQLLRKYIAYARSFVFPRMSKPAADIIQNFYLKLRDHNVSADGTPITARQLESLVRLAEARARLDLRVEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYSLADRISLKVPDMDTFIENLNIVGYLIKKGPKTYQVLSSSYSRSQSSKSRG* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0946 799 SMART AAA_5 391 543 IPR003593 -
Tpr6g0946 799 Pfam MCM OB domain 141 269 IPR033762 -
Tpr6g0946 799 ProSiteProfiles MCM family domain profile. 347 554 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 SUPERFAMILY Nucleic acid-binding proteins 67 271 IPR012340 -
Tpr6g0946 799 Gene3D - 141 270 IPR012340 -
Tpr6g0946 799 MobiDBLite consensus disorder prediction 561 580 - -
Tpr6g0946 799 SMART mcm 137 699 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PANTHER DNA HELICASE MCM8 22 794 - -
Tpr6g0946 799 CDD MCM8 351 697 - -
Tpr6g0946 799 Pfam MCM P-loop domain 343 558 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 22 794 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 Gene3D - 168 218 - -
Tpr6g0946 799 Gene3D - 325 708 IPR027417 -
Tpr6g0946 799 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 405 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PRINTS Mini-chromosome maintenance (MCM) protein family signature 450 464 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PRINTS Mini-chromosome maintenance (MCM) protein family signature 477 490 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PRINTS Mini-chromosome maintenance (MCM) protein family signature 501 513 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 PRINTS Mini-chromosome maintenance (MCM) protein family signature 528 536 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tpr6g0946 799 Pfam MCM AAA-lid domain 615 698 IPR041562 -
Tpr6g0946 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 704 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0946 Tpr-Chr6 8327420 8335013 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0946 36 785 Core DNA Replication Machinery Family AT3G09660 73.404 0.0 1152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0946 K10737 - gmx:100784549 1270.37