Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0936 ATGGGGAAGAAGGGAAATTGGTTTTCTAATGTGAAGAAAGCTCTCAGCCCTGATTCAAAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGGAAAAATTGCAGACTTCGGACCCTTCCTTAGGAACTGATACAGCACCGCCTCTTCCTCCACCGGAAGATATTAAATTAACTGATATTGAAAATCAAATCAGTCACCATCATGTTGCTGAAATTACAACTTCCGTGGTTGATGACAAACCTGGTCCTTCTGTTCAGGCAGCAGTTATTAGGACCGAAGCCGTCGTAGTTTCTCGTTTTCCCGGTAAACCAAAGGACGAAGTGGCTGCAATCAAGATTCAGACAGCTTTTCGGGGATACTTGGCGAGAAGAGCATTGCGGGCTTTACGAGGGCTGGTCAGATTGAAAACATTGATGGAAGGGCCCGTTGTAAAACGGCAAGCCATGAGTACCCTCCGCTCAATGCAGACATTAGCTCGTGTGCAATCTCAGATTCGTTCTAGGAGGGTTAGAATGTTAGAGGAGAATCAGGCTTTACAGAGACAGCTCTTACAGAAGCATGCAAGAGAACTTGAGACCATGCGGATTGGAGAGGAATGGGATGATAGCATACAATCAAAAGAACAAATTGAAGCCAAATTATTGAGCAAGTATGAGGCTACTATGAGAAGAGAAAGAGCATTGGCTTATGCGTTCACTCATCAGCAAAATGGGAAGAACTCGTCTAGATCTATGAATCCAATGTTCGTGGATCCAACCAATCCTACATGGGGCTGGAGCTGGCTAGAACGATGGATGGCTGCCCGACCTTGGGAGAGCCGTGGCCTTACCGATAAAGAATTGAATGATCATTCATCTGTTAAAAGTTCAAGCCGTGGCATTGCTGGTGGAGAAATCAGCAAATCGTTTGCTCGTTTCCAGCTAAATTCCGAAATACATTCTCCAGCAGCCAGCCAAAATCCCGGCTCACCTAGTGTTCAGTCCAATTCAACTCCTACTAAGCCAGGTTCTGCAGGAGTTGCAAGGAAACTGAAGAAGGCGAGTCCAAAGGGAAGCTGGGTTATGGAAGATGACTCAAAAAGCATGGCCAGTGTACAGTCAGGGTTCCGTAGGCACTCAATTGCCGGGTCATCAGTTAGAGATGATGAGAGTCTTGCTAGCTCTCCATCAGTTCCGAGTTATATGGTGCCGACTCAATCTGCGAAAGCTAGGTCGAGGACACAGAGTCAAAGTCCATTAGCTACAGAAAATGGCAAACAAGACAAGGGATCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTCCCGGCTTCACCCGTCAGGACAAGGCGTCATTCAGGTCCACCAAAGGTAGAAACCGCCATAAATGCAGAGTTCACAGTGGGCAATGGTGTGGCAAGTTGA 1404 0.4623 MGKKGNWFSNVKKALSPDSKKSSKSKKKWFGKEKLQTSDPSLGTDTAPPLPPPEDIKLTDIENQISHHHVAEITTSVVDDKPGPSVQAAVIRTEAVVVSRFPGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKTLMEGPVVKRQAMSTLRSMQTLARVQSQIRSRRVRMLEENQALQRQLLQKHARELETMRIGEEWDDSIQSKEQIEAKLLSKYEATMRRERALAYAFTHQQNGKNSSRSMNPMFVDPTNPTWGWSWLERWMAARPWESRGLTDKELNDHSSVKSSSRGIAGGEISKSFARFQLNSEIHSPAASQNPGSPSVQSNSTPTKPGSAGVARKLKKASPKGSWVMEDDSKSMASVQSGFRRHSIAGSSVRDDESLASSPSVPSYMVPTQSAKARSRTQSQSPLATENGKQDKGSFGTAKKRLSFPASPVRTRRHSGPPKVETAINAEFTVGNGVAS* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0936 467 Pfam IQ calmodulin-binding motif 110 128 IPR000048 GO:0005515
Tpr6g0936 467 ProSiteProfiles IQ motif profile. 107 135 IPR000048 GO:0005515
Tpr6g0936 467 SMART iq_5 106 128 IPR000048 GO:0005515
Tpr6g0936 467 PANTHER IQ-DOMAIN 5-RELATED 1 462 - -
Tpr6g0936 467 Gene3D - 67 135 - -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 17 34 - -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 1 51 - -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 360 374 - -
Tpr6g0936 467 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 462 - -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 316 455 - -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 381 423 - -
Tpr6g0936 467 Pfam Protein of unknown function (DUF4005) 369 447 IPR025064 -
Tpr6g0936 467 MobiDBLite consensus disorder prediction 316 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0936 Tpr-Chr6 8269150 8273245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0936 1 467 IQD Protein Family AT5G03040 51.943 2.46e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0936 - - gmx:100800080 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0936 6 8269150 8273245 Tpr6g0936 6 8269150 8273245 ECH
Tpr6g0936 6 8269150 8273245 Tpr1g3996 1 44818044 44827184 PCT