Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0931 ATGGCTAATGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAATTCGGCACCGATATTGCTAGGTTTCAGAAAAAAGATACCGACAACAGTTTGGTGAAGATTCAGAGTGTGATAGAAGATGAAGAAAACAAGGAAACAATAGAAGCTGTTTCTGCTAAGAAGAGAAAGCGCAAGAAAACCTCTTCAGAAGCGGTTGACGGATTCAGTGTGTTCCGAAGTTCCACATCCAAGTCAAACAAAGAAGTCAAAGTCGATGACAACGAGGATGAGTCCATTCGGCTGAAGAAAGAACAAAATAAGCAACTTGAGCGTGATGCAATCTTCAGAAAGAATCATAACATTCATGTCTCCGGTTACAATGTGTCTTCCCCACTTCAAAGCTTTGACGAGTTGAATACAAGATATAAATGTCCGTCCTATTTATTACGGAATCTGGCAGAACTTGGATTCAGAGAACCAACACCAATCCAACGACAGGCTATTCCAGTACTCTTACAGGATCGTGAATGTTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCCTTGCATTTGTGTGTCCCATGCTCATGAAGCTCAAGGCTCATGCAAAAGGCGGCGTTCGAGCTGTTATTATTTGTCACAGTCGTGAATTATCTGGTCAAACATATCGAGAGTGCAAAAAGCTTGCCAAAGGGGAAAAGTTCCGCATCAAGTTAATGACAAAAAGTCTTTTAAGAAATGCTGATTTTTCAAAATTTTCTTGTGACATACTTATATCCACGCCACTTCGATTACGCTTGGCTATCAAGAAGAAAAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAGTCTGATAAGCTATTTGAGCCTGGGTTGTTCACGCAGATTGATTCTATTATCAAAGCATGCACAAATCCCTCAATAATACGCTCTCTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGTGCTCGAGAACTGATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATTAAGCAAAAGTTGGTTTTTACGGGAAGCGAAGAAGGAAAACTTATAGCAATTCGGCAAAGTTTTGCAGAGAGTTTAAATCCTCCAGTATTGATATTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGGGAACTTGCATTCGACAATATTAGAGTTGATGTCATCCATTCGGATTTGTCTCAAGATGAGCGAGAAAATGCAGTTGACAACTTCAGAGCTGGTAAAACATGGGTTTTGATTGCCACTGATGTGGTTGCTCGGGGAATGGATTTCAAAGGCATTAACTGTGTGATCAATTATGACTTCCCAGATTCTGCATCGGCATATATCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGAGTGGCGAAGCGATTACATTTTACACAGAGGAGGATATTCCATTCTTGCGGAATGTAGCTAATATAATGGCATCCTCAGGTTGTGAAGTTCCATCCTGGTTGACGGAGTTACAGAAAAAGAAGTGGAAGAAGCACCGGCCCAACAGAGATTCTATCTCAACCAAACCTGTAGTCGAAAAGGAAAACTCAACAAAACCTGATCTATAA 1614 0.417 MANDSSFLFAGIRFDRKKFGTDIARFQKKDTDNSLVKIQSVIEDEENKETIEAVSAKKRKRKKTSSEAVDGFSVFRSSTSKSNKEVKVDDNEDESIRLKKEQNKQLERDAIFRKNHNIHVSGYNVSSPLQSFDELNTRYKCPSYLLRNLAELGFREPTPIQRQAIPVLLQDRECFACAPTGSGKTLAFVCPMLMKLKAHAKGGVRAVIICHSRELSGQTYRECKKLAKGEKFRIKLMTKSLLRNADFSKFSCDILISTPLRLRLAIKKKKVDLSRVEYLVLDESDKLFEPGLFTQIDSIIKACTNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLIAIRQSFAESLNPPVLIFVQSKERAKELYGELAFDNIRVDVIHSDLSQDERENAVDNFRAGKTWVLIATDVVARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEEDIPFLRNVANIMASSGCEVPSWLTELQKKKWKKHRPNRDSISTKPVVEKENSTKPDL* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0931 537 Pfam DEAD/DEAH box helicase 158 322 IPR011545 GO:0003676|GO:0005524
Tpr6g0931 537 Gene3D - 335 512 IPR027417 -
Tpr6g0931 537 SMART ultradead3 153 350 IPR014001 -
Tpr6g0931 537 Pfam Helicase conserved C-terminal domain 370 468 IPR001650 -
Tpr6g0931 537 SMART helicmild6 387 468 IPR001650 -
Tpr6g0931 537 CDD SF2_C_DEAD 347 477 - -
Tpr6g0931 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 346 507 IPR001650 -
Tpr6g0931 537 CDD DEADc_DDX52 145 338 IPR044764 GO:0003724|GO:0005524|GO:0030490
Tpr6g0931 537 MobiDBLite consensus disorder prediction 518 537 - -
Tpr6g0931 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 165 335 IPR014001 -
Tpr6g0931 537 MobiDBLite consensus disorder prediction 510 537 - -
Tpr6g0931 537 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 134 162 IPR014014 GO:0003724
Tpr6g0931 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 480 IPR027417 -
Tpr6g0931 537 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 525 - -
Tpr6g0931 537 Gene3D - 73 334 IPR027417 -
Tpr6g0931 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0931 Tpr-Chr6 8230562 8236850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0931 128 506 Eukaryotic Initiation Factors Gene Family AT3G19760 30.709 1.59e-53 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0931 K14779 - gmx:100800969 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0931 6 8230562 8236850 Tpr6g0931 6 8230562 8236850 ECH