Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0924 ATGATTAGGCTTGGAGATGGGCAATGTGTTTTGATTGTTAATTTTATGGTTCATTTGAATTATCTGAGTATATTAAGGGTGACGAGTTATGTGAGGCCTTCTCTGTTTTCTCAAATTATGGGGCATAGACACCTATACAATGCATCATCTCCAATGTTTGAGGGTGAGGCTGACCAAAATTGGAATCAAATGCATACTGATCAACATCATGTGAACCATGGGGGGACCAGCTCTTCAGAGAATGGTTCTTTCAATTATCCTGTGGAAAATATATCTATAGATAACATTTATTTCCCCTCTCATTGGAATGCCAACACAAGGTCAAATGGATATGCATCCTCTGGACTCAACATTGAAGTACCTCCTCCTCCTCATCAATTGGATACACCAGGCACTTCTAACAATCATTTTATGCATTCATCTAGTGCTGGACCTTTCTTTACAGTGTCTGAAAACTATGTACACCAGCCTTCTTCTTCTTCCAATTATGATAGACAAGCATTTCATGTTGATAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACATCACAAGAGAAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTTCAAGTGGATATTTCAATGCTGGGAGTTCAACTGATCTTCCTATGCCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCGTGGGATCATGTTGCTATGACAACACCCAATTTCAGAGGTGCTGGCCTCTCAATGAAGGGTGAGAGTTCTGTAAGGAACGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGTCTAGGACCCATTTGTCAAATAACCATTCACACAACTCGTTCCCTAATGTCCCACCAGTCGGCCATTCTAGCTTGGCGGATCTTTCAGCTCAGGTTTCTACCTCTTTGACAAGAGATTGGAGCCAAATGAACGTAACTCCTGCTAATGGAAGAGTGTTATTATCAGATTCTAGTACTTTTGGTCTTGAGACAAGTCACTTCCCGGTTGGAAATGCTGCTGCTACTGCTGCTAGTAATGCTACTTTAGATGTCGGAAGCTTCCATCATGAATATGGTACAAGCAGAAATCCTACTACTGCTCAAAGTTTTCAAAATTTGACTCAGACTGCTAGGGGAACACGAAGTAATTACTCTCAAAGATCCGCTCCAGCTTATAGGGCTTCTTCAAGCTTGCGCCTGGGACATCCACCTTCAGAAAATAATGGATTGCCCATGGTAGCTGAAAGTCACCCTTCTAGACATCCTAGGCCGTTGACCACTATTGGTTGGCGGAACAGTGATAGAAATGGAAGGTCAAGAATTTCGAGTGAAAGATATAGAGCATTGGCTGATGAGGCTAGTCTCCATGCTAGATTTGCTTCTGAGGTACCGGGTTTCATGATTGTTGAGCGTGCTTCACTATATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGTTGGACGTAGATAGCATGAGCTATGAGGAACTGCTTGCACTTGGGGAGAGGATTGGCCAGGTGAACACAGGATTGTCTGAGGATGTGGTTTCCAAGTGTTTGACGGAAACAATATATTGTTCATCTGACCAATGTCAGGATGAAGGAAGCTGTGTGATCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAAAACTTGTGGACACGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAACTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1794 0.4259 MIRLGDGQCVLIVNFMVHLNYLSILRVTSYVRPSLFSQIMGHRHLYNASSPMFEGEADQNWNQMHTDQHHVNHGGTSSSENGSFNYPVENISIDNIYFPSHWNANTRSNGYASSGLNIEVPPPPHQLDTPGTSNNHFMHSSSAGPFFTVSENYVHQPSSSSNYDRQAFHVDSGFIDLTMGSGRGHHKRKSPGIPSVYERGSSSGYFNAGSSTDLPMPSESRPEKPNMDSQYMPWDHVAMTTPNFRGAGLSMKGESSVRNVRSRSALDLESNLSRTHLSNNHSHNSFPNVPPVGHSSLADLSAQVSTSLTRDWSQMNVTPANGRVLLSDSSTFGLETSHFPVGNAAATAASNATLDVGSFHHEYGTSRNPTTAQSFQNLTQTARGTRSNYSQRSAPAYRASSSLRLGHPPSENNGLPMVAESHPSRHPRPLTTIGWRNSDRNGRSRISSERYRALADEASLHARFASEVPGFMIVERASLYGSRNMLDQHRDMRLDVDSMSYEELLALGERIGQVNTGLSEDVVSKCLTETIYCSSDQCQDEGSCVICLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKLCPICKASALPEDKKDK* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0924 597 MobiDBLite consensus disorder prediction 381 405 - -
Tpr6g0924 597 Pfam Ring finger domain 543 586 IPR001841 -
Tpr6g0924 597 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 40 593 IPR045191 GO:0061630
Tpr6g0924 597 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 40 593 - -
Tpr6g0924 597 CDD RING-H2_TTC3 543 586 - -
Tpr6g0924 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 590 IPR013083 -
Tpr6g0924 597 ProSiteProfiles Zinc finger RING-type profile. 544 586 IPR001841 -
Tpr6g0924 597 SUPERFAMILY RING/U-box 535 590 - -
Tpr6g0924 597 MobiDBLite consensus disorder prediction 381 398 - -
Tpr6g0924 597 SMART ring_2 544 585 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0924 Tpr-Chr6 8160939 8169246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0924 40 596 C3H Transcription Factor Family AT2G37150 40.767 5.10e-104 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0924 - - gmx:100803627 882.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0924 6 8160939 8169246 Tpr6g0924 6 8160939 8169246 ECH