Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0919 ATGAATATACTTGGTGACCCCTTTTCACTATCCTCTTCCACTAGTGGTTTTGACAAAATCCAAAATCCAAACCCTAATCCACCACAAACCAACAAGAAGAAAAGAAATCTACCAGGAACACCAGATCCAGATGCTGAAGTCATTGCTCTTTCGCCAAAGACTCTAATGGCGACAAACCGATTTGTCTGTGAAATATGCAACAAAGGATTCCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCACAACTTACCATGGAAGCTAAAGCAAAGATCCAACAAAGAACCAAGAAAAAAGGTATACATCTGTCCGGAGAAAACCTGCGTCCATCACGACGCAGCCAGGGCACTCGGAGACCTTACCGGAATAAAGAAACATTTTAGCAGAAAACATGGAGAAAAGAAATGGAAGTGTGATAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTCTTCTCTAGGAAGGATAGCTTTATAACACACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGACAAACCTCACTCCCACCTCCAACAACTCTAAATTTCAAGAATGAAGAATCAAATATGATGAACAATCAAACTAGTTTGTCACATAATGGATTATTATCATGTCAAGGACTTCAAAATCTTCCACAATTTAATACTCCACATAATGCACTGTTTCATCATGAACAAAGACCAAACTTGTCATTATGGCTAAACCAAGAAAATCAACAAATGAATCATCAACATCATCATCAAATTCAACATGATTCACTTGAGGATCATGCTTCATCAAGTTTTTGTGATGTTATGCAAATGACACAAACTAGTACTGCTCCAATGTCAGCTACTGCACTTCTTCAAAAAGCAGCTCAAATGGGTTCAACAAGAAGTAGCACTAATCCTTCCATTTTTAATGGAAGTTTTGGTTTAATGAGTTCATCTTCAACACAAACTAATAATAGTACTCTAAACCAAAATCATGATGAGGTTAATATGGTCATTAATCAGAATATGAAGCAGCATGAGAATTATAATAATGCAGCTATGGTTGGTAATGGTAATTCAAGTAATGGATTTAGAGATTTTCTTGGTGTGAGTAATGATCATCCTCATCATTCATTTCTACCTCAAGAGCTGGCAAAGTTTGCTTCAATGACTTCATCTATGATGAGTTTCAATCAATTCAATGCATGA 1251 0.3677 MNILGDPFSLSSSTSGFDKIQNPNPNPPQTNKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKKVYICPEKTCVHHDAARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARQTSLPPPTTLNFKNEESNMMNNQTSLSHNGLLSCQGLQNLPQFNTPHNALFHHEQRPNLSLWLNQENQQMNHQHHHQIQHDSLEDHASSSFCDVMQMTQTSTAPMSATALLQKAAQMGSTRSSTNPSIFNGSFGLMSSSSTQTNNSTLNQNHDEVNMVINQNMKQHENYNNAAMVGNGNSSNGFRDFLGVSNDHPHHSFLPQELAKFASMTSSMMSFNQFNA* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0919 416 MobiDBLite consensus disorder prediction 10 36 - -
Tpr6g0919 416 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Tpr6g0919 416 SMART c2h2final6 102 132 IPR013087 -
Tpr6g0919 416 SMART c2h2final6 137 157 IPR013087 -
Tpr6g0919 416 SMART c2h2final6 61 83 IPR013087 -
Tpr6g0919 416 PANTHER ZINC FINGER PROTEIN JACKDAW 6 405 IPR033243 GO:0003700
Tpr6g0919 416 Gene3D Classic Zinc Finger 57 84 - -
Tpr6g0919 416 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Tpr6g0919 416 MobiDBLite consensus disorder prediction 10 40 - -
Tpr6g0919 416 Gene3D Classic Zinc Finger 96 185 - -
Tpr6g0919 416 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 405 - -
Tpr6g0919 416 Pfam Zinc finger, C2H2 type 61 83 IPR013087 -
Tpr6g0919 416 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0919 Tpr-Chr6 8131374 8133890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0919 3 404 IDZ Gene Family AT5G03150 49.501 3.36e-131 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g0919 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0919 K25870 - cpap:110815802 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0919 6 8131374 8133890 Tpr6g0919 6 8131374 8133890 ECH