Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0913 ATGGGAAACAGCTCAAGCAACGGCGGTAACAACCGTCGTCGACACAGCAGTTCAAGAAGAAATCGGCCACCACCACCACCTGTAACACCACAACCCGAAATCTCAACAAATCATCCATTTGTTTACCCTGGTTCTTCACCGTACCCGAATCCACCTATGCATTATCCTCAGTATAATTACCCTGGTTATTATCCACCACCGGTACCTATGCATCATCCTCATCATCAACATCGTCATCATCATCCTCATCAACATATGGACCCTGATTGGGTTTCCAGGTATTATCCTTGTGGACCGGTTATGAATCAACCTGCACCGTTTGTTGAGCATCAGAAAGCTGTTACTATAAGGAATGATGTTAATATTAAGAAAGAGACTCTTGCTGTTTCACCTGATCAAGATAACCCTGGTTTTTTTCTTGTTTCGTTTACCTTTGATGCTACCGTTTCTGGAAGCATCGCCATATATTTCTTTGCAAAAGAAGATGAAGGCTGCATCCTCACCCCGACCAAGGAAAACCATCGTGCACCTGTAACTGTACAATTCCAGCAAGGTCTCGGACAGAAGTTTAGACAGCAAGCTGGAACTGGTATTAACTTTTCAATGTTTGAGGAGTCAGATTTATTAAAGGTGGGTGACAAGGATGTCTACCCTCTAGCGGTGAAGGCAGATGCATCATCTAATAATCATGATGGATCAAATGAGACTGTGACATCTGGCAAGACAAACTCTCAAATAACTCAAGCGGTGTTTGAGAAGGAGAAAGGACAATTTCGGGTAAAAGTTATTAAGCAGATTTTGTCTGTAAATGGGATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAAGGTGGCGTGGATGACAATGAACAAGGAAAGGAATGTGTGATATGTTTGTCGGAGCCTCGTGACACAATCGTTCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGTTTTGAGGTTCCAGACGAATAGATGCCCGATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGACTGAAGAGTAA 1062 0.435 MGNSSSNGGNNRRRHSSSRRNRPPPPPVTPQPEISTNHPFVYPGSSPYPNPPMHYPQYNYPGYYPPPVPMHHPHHQHRHHHPHQHMDPDWVSRYYPCGPVMNQPAPFVEHQKAVTIRNDVNIKKETLAVSPDQDNPGFFLVSFTFDATVSGSIAIYFFAKEDEGCILTPTKENHRAPVTVQFQQGLGQKFRQQAGTGINFSMFEESDLLKVGDKDVYPLAVKADASSNNHDGSNETVTSGKTNSQITQAVFEKEKGQFRVKVIKQILSVNGMRYELQEIYGIGNSVEGGVDDNEQGKECVICLSEPRDTIVHPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVGTEE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0913 353 SUPERFAMILY RING/U-box 298 343 - -
Tpr6g0913 353 SMART ring_2 299 337 IPR001841 -
Tpr6g0913 353 MobiDBLite consensus disorder prediction 1 35 - -
Tpr6g0913 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 348 IPR013083 -
Tpr6g0913 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 352 - -
Tpr6g0913 353 Pfam Zinc finger, C3HC4 type (RING finger) 297 343 - -
Tpr6g0913 353 ProSiteProfiles Zinc finger RING-type profile. 299 338 IPR001841 -
Tpr6g0913 353 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 298 338 IPR045195 -
Tpr6g0913 353 PANTHER MAHOGUNIN 1 352 IPR045194 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0913 Tpr-Chr6 8061886 8066935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0913 88 318 C3H Transcription Factor Family AT3G09770 61.017 9.66e-97 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0913 - - aprc:113862864 510.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0913 6 8061886 8066935 Tpr6g0913 6 8061886 8066935 ECH