LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr6g0911	ATGGCAAAAGACTTTGAAACCGAACCTCAAGCTGGTGGTGGTTTACCAAACAAGGACTACCAAGATCCACCACCAGCTCCACTCTTCGACACTACAGAATTCGGCCAATGGTCCTTCTATAGAGCCCTCATTGCCGAATTCGTCGCGACTCTCCTCTTCCTCTATGTCACCATTTTAACCGTCATTGGCTACAACTCCCAAACTGATCCAGCTCATAATGGCACCCATTGTGACGGTGTCGGTATCCTCGGCATCGCTTGGGCCTTCGGTGGCATGATTTTTGTCCTTGTCTACTGCACTGCCGGTATATCTGGGGGACACATAAATCCGGCGGTAACATTTGGGCTATTTCTGGCAAGGAAGGTCTCATTGATCAGAGCTGTGTTATACATAGTGGCACAGTGTTTAGGAGCAATATGTGGGGTTGGATTAGTAAAAGCTTTTCAGAAAGGTTACTATAACAGATACAAAGGTGGTGCAAACATGTTAAATGATGGTTACAGTAAAGGAACTGGTTTAGGTGCTGAGATAATTGGAACTTTTGTTCTTGTTTACACAGTTTTCTCTGCCACCGATCCAAAAAGAAATGCTAGAGATTCTCATGTTCCTGTTTTGGCACCACTTCCAATTGGGTTTGCTGTGTTTATTGTTCACCTTGCTACAATTCCTATCACTGGAACTGGTATCAATCCTGCTAGAAGCTTTGGTGCTGCTGTGATTTACAACAATGAGAAAGCATGGGATGACCAATGGATTTTCTGGGTTGGACCCTTTATTGGTGCTGCCATTGCTGCAATTTACCACCAGTTTGTGTTGAGAGCACAAGCAGCGAAGGCTTTGGGTTCTTTCAGGAGTTCTTCAAATCTGTAA	870	0.446	MAKDFETEPQAGGGLPNKDYQDPPPAPLFDTTEFGQWSFYRALIAEFVATLLFLYVTILTVIGYNSQTDPAHNGTHCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYIVAQCLGAICGVGLVKAFQKGYYNRYKGGANMLNDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQFVLRAQAAKALGSFRSSSNL*	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr6g0911	289	Pfam	Major intrinsic protein	35	268	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	41	60	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	89	113	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	126	145	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	175	193	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	211	233	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PRINTS	Major intrinsic protein family signature	251	271	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	PANTHER	AQUAPORIN OR AQUAGLYCEROPORIN RELATED	1	286	IPR034294	-
	Tpr6g0911	289	Gene3D	Glycerol uptake facilitator protein.	26	289	IPR023271	-
	Tpr6g0911	289	CDD	MIP	41	271	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Tpr6g0911	289	SUPERFAMILY	Aquaporin-like	35	273	IPR023271	-
	Tpr6g0911	289	MobiDBLite	consensus disorder prediction	1	23	-	-
	Tpr6g0911	289	ProSitePatterns	MIP family signature.	107	115	IPR022357	-
	Tpr6g0911	289	PANTHER	AQUAPORIN PIP2-4-RELATED	1	286	-	-
	Tpr6g0911	289	TIGRFAM	MIP: MIP family channel proteins	45	267	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr6g0911	Tpr-Chr6	8043519	8045421	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr6g0911	1	289	Major Intrinsic Protein MIP	AT3G53420	80.277	7.66e-171	472

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr6g0911	K09872		-	twl:119984821	498.049

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tpr6g0911	6	8043519	8045421	Tpr1g1005	1	8790082	8794056	ECH
	Tpr6g0911	6	8043519	8045421	Tpr6g0911	6	8043519	8045421	ECH
	Tpr6g0911	6	8043519	8045421	Tpr4g1693	4	17481213	17483271	ECH