Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0905 ATGGAAGCAGTAGCAGCAGCCATAACAAAAAACAACAATGGTTATGATTCATTTTGTTTGAGTCATGCTAATGCTAATAACATGAAAGTGAATGGTGCTGATCCTTTGAATTGGGGTGTGGCTGCTGAGGCAATGAAAGGGAGTCACTTGGATGAGGTGAAGCGTATGGTGGAGGAGTACCGGAAACCGGTGGTCCGTCTTGGTGGTGAGACACTGACAATTTCTCAGGTGGCTGCCATTGCTGCACATGATGGTGCCACAGTGGAGCTGTCGGAATCTGCTAGAGCCGGCGTTAAGGCGAGCAGTGACTGGGTTATGGAGAGTATGAACAAAGGTACTGATAGTTACGGTGTCACCACAGGGTTCGGCGCTACCTCGCACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATAAGGTTTTTGAATGCTGGAATATTTGGAAATGGAACTGAGTCAAACCACATCCTACCACACACAGCAACACGAGCAGCCATGTTAGTAAGAATCAACACACTTCTACAAGGTTATTCAGGCATTAGATTTGAAATCTTAGAAGCCATAACCAAGCTCCTTAACAACAATATTACTCCATGTTTACCACTTCGCGGTACAATCACAGCTTCGGGAGATTTAGTGCCTCTTTCTTACATTGCTGGTTTACTAACTGGTAGACCAAATTCAAAAGCTCATGGGCCCTCTGGAGAAATACTTAATGCTAAAGAAGCTTTTCAATTGGCTGGAATCAATGCTGATTTCTTTGAGTTACAACCGAAAGAAGGTCTTGCACTTGTTAATGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTGTTTGAGGCTAACATATTGGCGGTGTTGTCTGAAGTTCTATCTGCAATTTTCGCTGAAGTTATGCAAGGGAAGCCTGAATTTACCGATCATTTGACACATAAGTTGAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTGCTTATGTTAAGGCAGCAAAAAAGTTGCATGAGATTGATCCTTTACAGAAACCAAAACAAGATAGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTCTAATTGAAGTGATTAGATTCTCTACCAAGTCAATTGAGAGAGAGATCAACTCTGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAGGCTTTGCATGGCGGGAATTTTCAAGGAACACCTATCGGAGTATCCATGGATAATACACGTTTGGCTCTTGCATCAATTGGGAAACTTTTGTTTGCTCAATTCTCCGAGCTTGTAAATGATTTTTACAACAACGGATTGCCTTCAAATCTCTCCGCCAGTAGAAATCCGAGCTTGGATTACGGGTTCAAGGGATCCGAAATTGCCATGGCTTCCTATTGTTCTGAGTTACAATATCTTGCAAATCCAGTTACAACTCATGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAACTCTTTAGGTTTAATTTCTTCTCGAAAAACAAAAGAAGCCATTGAGATCCTTCAACTCATGTCTTCCACATTCTTGATTGCACTTTGCCAAGCAATTGATTTAAGACATTTGGAGGAGAACTTGAAAAACTCAGTCAAGAATACCGTAAGCCAAGTGGCCAAAAAGACCTTAACTGTAGGTGTCAATGGAGAACTTCATCCTTCAAGATTCTGTGAAAAAGACTTGTTGAAAGTGGTTGATAGGGAGCATGTGTTTTCCTATATTGACGATCCTTGTAGTGCGACATACCCCTTGTCGCAAAAACTCAGGCAAGTGCTAGTAGAACATGCTTTAGTCAATGGAGAAAGTGAGAAGAATTCGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGAAGAGTTGAAGACCCTCTTGCCAAAAGAGGTTGAAAGTGCAAGGACTGCATATGAGAGTGGAAACTCAACAATTGCAAACAAGATTAATGGATGCAGATCTTATCCACTTTACAAGTTTGTGAGAGAGGAGTTGGGAACTTCTTTGCTAACTGGAGAAAGAGTCATTTCACCAGGTGAGGAGTGTGACAAGCTATTCACAGCTATGTGTCAAGGGAAAATCATTGATCCTCTTCTTGAATGTTTGGGAGAGTGGAATGGTTCTCCTCTTCCAATTTGTTAA 2175 0.4193 MEAVAAAITKNNNGYDSFCLSHANANNMKVNGADPLNWGVAAEAMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIAAHDGATVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESNHILPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEILNAKEAFQLAGINADFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSAYVKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLLFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGSEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTKEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTLTVGVNGELHPSRFCEKDLLKVVDREHVFSYIDDPCSATYPLSQKLRQVLVEHALVNGESEKNSNTSIFQKIATFEEELKTLLPKEVESARTAYESGNSTIANKINGCRSYPLYKFVREELGTSLLTGERVISPGEECDKLFTAMCQGKIIDPLLECLGEWNGSPLPIC* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0905 724 CDD PAL-HAL 70 534 IPR001106 -
Tpr6g0905 724 Gene3D - 537 658 IPR023144 -
Tpr6g0905 724 Gene3D Fumarase/aspartase (Central domain) 271 718 - -
Tpr6g0905 724 Gene3D - 24 270 IPR024083 -
Tpr6g0905 724 PANTHER HISTIDINE AMMONIA-LYASE 26 724 IPR001106 -
Tpr6g0905 724 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 206 222 IPR022313 GO:0016841
Tpr6g0905 724 Pfam Aromatic amino acid lyase 72 546 IPR001106 -
Tpr6g0905 724 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 26 724 - -
Tpr6g0905 724 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 34 713 IPR005922 GO:0005737|GO:0006559|GO:0016841
Tpr6g0905 724 SUPERFAMILY L-aspartase-like 34 724 IPR008948 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0905 Tpr-Chr6 7925957 7929212 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0905 11 724 Monolignol Biosynthesis Gene Families AT2G37040 81.564 0.0 1242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0905 K10775 - gmx:100803857 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0905 6 7925957 7929212 Tpr1g3945 1 43803600 43809252 PCT