Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0904 ATGAAAGCTCGGAATCTTGTCGCTGATGATGGAAGGGATTCCTATTCAAGGCATGGCAAAGATTTGACTAAAGAATATAAAGATAACACAAGGGTGGATCATCGTGGGGAAAATGGAAAAGGTGACGGGGAAGTTGTATGTCACAAGTGTTTGCGTGGAGGAACGCTCTTGCACTGTTGTGGTAAAGGGTGTAAAAGGAGGTATCACCCGTCTTGTTTGGATCTTCCTCTCAAATTTCTTCCTATTGGGTTTTGGCATTGTATTCGGTGCGTGAAGAAAAAAATAAAGCTTGGGGTGCATTCCGTTTCTGAAGGGGTAGAATCCATATGGGATTCCCGAGAAGTGGTTCCAAAAGATGAAGTGATCCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTCGCTCATGCTCACAACTGTTGGATTCCAGAAAAGCAAATGCTTATTGAAGCTCCAAAGCTTTTGGAAAAATATAAGAAGAAACAACAGGTTGTCAGGTGGAAAAAAGATTGGAGTATACCTCACCGGTTGCTGCTAAAAAGAAAAATTGTCTTGTCAAAGCTAAATGCTCACCCTTTTGATGGAAGCGATGACAATGGTTCAGTTTGCCAATATGAATGGCTTGTGAAATGGACTGGTCTTGGTTATGATCATGTTACATGGGAGTTAGACGACGCTATATTTTTGACATCATCTAAAGGGATTAAACTCATGGACAATTATGAAAGTCGTCAAAAGAGATCAGATGGGCTGTCAAATCCTCTTGAAGTTAAGGAGGAGAGAAAAGATTCCTTTACCGAATTATCAGAGCTATCATCTGGAGATTTACCAGGATTGTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCACAAAGGTCAGAGTGCCGTTATAGTTGATGATCAAATTGACCAGGAGCGGGTTAGGAAGATGATTTTGTTTATATTATCTTTGAACTGCAATGTGAAAAGGCCTTTTCTCATCATCTCAACTTCTACTGGCCTCTCTGCATGGGAAACAGAATTCTTACATTTGGCACCATCTGCCAATCTCGTAGTTTACCATGGAGAAAAAGATGTACGCAGTAGCATCAGATCATTAGAATTTTACAATGAAGATGGTGTTTTATTTCAAATATTACTCTCATCATCTGATATTGTCGTTGAGGACTTAGATGCACTGCAATGCATTAAATGGGAAGCAATCATAATTGATGAATGCCAGCGGCGACCCAGAATTTTAGGAAACCTTGACGATGTCAATATTCTAGCAGCTGAGATAAGGCTCCTTCTCGTTAGTGGACAAATCAAGGAAGATCGAGCTGACTATATGAAACTGCTTTCTTTACTTAAGTCTGAACATGATGAGTTACATTTCTCATCTGCAAGCATCTCCGATTTGAAGAGTCAATTGGAACATTATATTGCACTTAAGTGCAATTCTGACTCCAGCAGGTTTATAGAGTATTGGGTTCCTGCCCAGCTTTCTAGTTTGCAGCTTGAGCAGTATTGTTCATTGCTGCTTTCAAACTCATTGTCGTTATGCTCAGGCCCGAAGCCTGCCTCCGTTGATGCCCTTGGCGAGCTTATTATCTCAACAAGGAAGTGCTGCAACCATCCTTATCTCCTCAACAAGTCACTGCATGATGTAGTCACTAGAGGTCTTCCTGTTGAAGAACATCTTGATATTGGAATAAAAGCAAGTGGAAAATTGCAACTTCTTGAAAAGATCCTTTTTGAAGCTAAACATCGTGAGCTAAGAGTGATAATATTATTTCAGTCTAGTGGTGGTTCTGGATCAATTGGAGATATTTTGGATGATGTTCTTCTTCAGAGATTTGGAAATGACTGTTATGTAAGATACGGTTGTGGGTACGTTCCTTCCAAGGCTCAAGCTGCTCTGGACACATTTAATGATCGAGAAAGTGGAAAATTCGTTTTCTTGATAGAGAGCCGTGCTTGTCATCCAAGCATTAAACTGTCATCTGTTGATATTATTATATCATTTGACAGTGGTTTGGACATGCAAAATGACATAAAATGCATACAAAAAATGTCATTCAGCTCAAAGTTAAAAAAGATAACAGTTTTGAGATTGTACTCGTGCTTCACTGTTGAAGAAAAGGTTCTAATGCTTGCAAAAGAGGGTATAGCTCTTGTATCCAACAAAAGAAAGAAAGAACATATGCAGTTAGTTAACCAGAGTACATATCACACCCTTCTAAAATGGGGGGCCTCTTATCTGTTCAGTAAGCTTGATGACTTACATGGAAGTGGCACCTCGGTCTCTGCTTCAGACATCTCCAATCAGTCAAATCTAAATGATGTAATCTGTGAATTATCATCCAAACTGGTTTGTGATAGCGGTGGCACTGATTCTCACAGACAGTCATTCATATCGAGAGTAGAGCAGAATGGAGGGGAATATGTAAGGAACATTTCATTGCTAGGAGAAAGAGAAATGAAGAAATTAGGCAATGAAACACATACTTTTTCCTGGAGTGATCTCCTCCAAGGAAGGAATCCTCGCTGGAAGTTTTTATCTGCTTCGTCTCAAAGGAACAGAAAAACAGTTGAATATTTTCATCACACAGTAAAAGGATCCGAAAATGAAAATGATGCCATTATAAGAAAGAAAAGGACAAAGTCCACGGATGGTGTTTATCCCATAGGAAAGAACGCGTCCAAGGATATTGTAGATCCTGAGGAGAGGAAAATCACCAAGGATAATGTTGACCCCAAACGAAGGAAGGTGTCCAAGGGAAGGAACGTGTCCACGGATGTTGTTGATTCCAAACATCTGAAAAAAAAGAGGAAGAATAAGAAGAGTCGAAGTGCTGATAAAAGCAAATGCAAATTGAATGGAGCAGCTGCAATGACTAAACAAATTCCAAATCAAAAGAAACTGCCGGACATGCCCAAGAGCAACAAACTCCTGTCAAAGCCTGATATATCTATATCACGTCTCTGTGATGTTCTACACTTTCCGGAAAATGACAAGGTTGTCGCCATGAAGATTCTTGAGCATGTATTCGAACATTATGACATTGATTGCCTGGAAGATTCTACAGTGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACACAAGATTGATAGGAAATATTCACTTGATCTTGCAAAAAGGCACTTGAATTTCAATTGCACGGAGGAAGAAGCCACCGATGTTTACAATTCACTGCAAGAGTGTAAGGAAGACATTTCAAGCTGTTTACAAAATGAACTTTGTGCTGAGAAAAGTAATATAAATGGTACTTCAAGCTCCACGACACGTGAGCTGCAACGTTCGGTAGAGGAGGAGAAGCAAAAGGGTTTTCAGCATCCAAGTGTTTCAAATCTTGTGAAATCTGCCACAAATGAACCCGATCTTCCAAGAAAATCTCCTACAACAGTGCTATTTTCACAAGACCAGATTTATACAGAAAACTTCCATAACGAACCTTATATGACTCATGAAATTTCTACATCTCAAACGACCCCTGGTAGTTTGCCTGTGGAAGCAGATGCTACTTCCATGGAATTGGAATCTGATGCAGATGAGAGAATAAATGCCGTGAACTTGGTAGCAGCTGAAGTTTCACATCTTGAGAACCGGAATATATTCCCCAATTCAAGTAATGATTTCAATAATGTCAATCCTGTAACAGGTTCTTTGGAAAGACAGAGTCCCATTGTAGGTTCAGATATTACACAATCTGATATCAGAGTTTTTGAAGATCCTCAAACTTTAATTAATCAAGTGATTGACATTGACAATTCTATGAATATATCAACTAATCTTGCACAACTTCACAATGTTGAGACAGATACCGTAACTTGTGATAGAACTGCTGTTCCCGAGGTCAGACATTGGGGCAGTATAGTGAGTCCTGTATGTGGTGAGTCAACCACTTCAGAGTTTGCTGAGTGTCCTTTACCATATAGGCAACGATCACATGCAAATTTAATGCCATTGCCACAGTCGTTGTCGGCTAGTCCATCTTTTATGGAGGACTTATCTCGTACAGTCATGCCCAGATTTGCAAATCATAATTGTCTTCGTGAATCTGTAGAAATATTGCAACCACTGTATGAACCTGTTGAACTGGTTGACACTCCCTCGCCTGTGACTTTGCAACCCTACAGTTATGCGCCTGGGAATGGAAATGCTTCTCATGTTCCTCACAACATTACTAATTCTGGATATATGAACAGGGATCCTTTTCTAGCTCATTATTTGACATCTCAAATGCCCTATGTTGCCAACCCAAACACACTACTATTTGAAATGGAGAGAATACAAAAAATGAATGAAGAAGCTGTCAAGACCTATGAGGAAAAAAAATTGCAGCTGCAGTCTGACTACGAAAAGGAGGTTGAAATGTTACGTGCAAAACACTATACGTTGCTTCAGAATGTCGATACTGCAGCAGCATTGAAGAAAGTTGAACTTGAGGCACAGAGAGATATTGTATTCAGGAATATGATATTAGCTGACGTTTGGAGCCGAACTGATAGTATTTGCTAA 4551 0.3977 MKARNLVADDGRDSYSRHGKDLTKEYKDNTRVDHRGENGKGDGEVVCHKCLRGGTLLHCCGKGCKRRYHPSCLDLPLKFLPIGFWHCIRCVKKKIKLGVHSVSEGVESIWDSREVVPKDEVIQREYFVKYQGLAHAHNCWIPEKQMLIEAPKLLEKYKKKQQVVRWKKDWSIPHRLLLKRKIVLSKLNAHPFDGSDDNGSVCQYEWLVKWTGLGYDHVTWELDDAIFLTSSKGIKLMDNYESRQKRSDGLSNPLEVKEERKDSFTELSELSSGDLPGLYNQHLSYVNKLRMCWHKGQSAVIVDDQIDQERVRKMILFILSLNCNVKRPFLIISTSTGLSAWETEFLHLAPSANLVVYHGEKDVRSSIRSLEFYNEDGVLFQILLSSSDIVVEDLDALQCIKWEAIIIDECQRRPRILGNLDDVNILAAEIRLLLVSGQIKEDRADYMKLLSLLKSEHDELHFSSASISDLKSQLEHYIALKCNSDSSRFIEYWVPAQLSSLQLEQYCSLLLSNSLSLCSGPKPASVDALGELIISTRKCCNHPYLLNKSLHDVVTRGLPVEEHLDIGIKASGKLQLLEKILFEAKHRELRVIILFQSSGGSGSIGDILDDVLLQRFGNDCYVRYGCGYVPSKAQAALDTFNDRESGKFVFLIESRACHPSIKLSSVDIIISFDSGLDMQNDIKCIQKMSFSSKLKKITVLRLYSCFTVEEKVLMLAKEGIALVSNKRKKEHMQLVNQSTYHTLLKWGASYLFSKLDDLHGSGTSVSASDISNQSNLNDVICELSSKLVCDSGGTDSHRQSFISRVEQNGGEYVRNISLLGEREMKKLGNETHTFSWSDLLQGRNPRWKFLSASSQRNRKTVEYFHHTVKGSENENDAIIRKKRTKSTDGVYPIGKNASKDIVDPEERKITKDNVDPKRRKVSKGRNVSTDVVDSKHLKKKRKNKKSRSADKSKCKLNGAAAMTKQIPNQKKLPDMPKSNKLLSKPDISISRLCDVLHFPENDKVVAMKILEHVFEHYDIDCLEDSTVQAFEISVCWLAASLLKHKIDRKYSLDLAKRHLNFNCTEEEATDVYNSLQECKEDISSCLQNELCAEKSNINGTSSSTTRELQRSVEEEKQKGFQHPSVSNLVKSATNEPDLPRKSPTTVLFSQDQIYTENFHNEPYMTHEISTSQTTPGSLPVEADATSMELESDADERINAVNLVAAEVSHLENRNIFPNSSNDFNNVNPVTGSLERQSPIVGSDITQSDIRVFEDPQTLINQVIDIDNSMNISTNLAQLHNVETDTVTCDRTAVPEVRHWGSIVSPVCGESTTSEFAECPLPYRQRSHANLMPLPQSLSASPSFMEDLSRTVMPRFANHNCLRESVEILQPLYEPVELVDTPSPVTLQPYSYAPGNGNASHVPHNITNSGYMNRDPFLAHYLTSQMPYVANPNTLLFEMERIQKMNEEAVKTYEEKKLQLQSDYEKEVEMLRAKHYTLLQNVDTAAALKKVELEAQRDIVFRNMILADVWSRTDSIC* 1517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0904 1516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 100 IPR013083 -
Tpr6g0904 1516 SUPERFAMILY Chromo domain-like 63 163 IPR016197 -
Tpr6g0904 1516 Gene3D - 105 163 - -
Tpr6g0904 1516 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 26 1121 - -
Tpr6g0904 1516 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1157 1508 - -
Tpr6g0904 1516 MobiDBLite consensus disorder prediction 912 958 - -
Tpr6g0904 1516 Gene3D - 184 271 - -
Tpr6g0904 1516 MobiDBLite consensus disorder prediction 912 936 - -
Tpr6g0904 1516 SMART chromo_7 169 245 IPR000953 -
Tpr6g0904 1516 SMART chromo_7 103 162 IPR000953 -
Tpr6g0904 1516 Gene3D - 1431 1511 - -
Tpr6g0904 1516 Gene3D - 490 721 IPR027417 -
Tpr6g0904 1516 ProSiteProfiles Zinc finger PHD-type profile. 44 93 IPR019787 -
Tpr6g0904 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 725 IPR027417 -
Tpr6g0904 1516 Gene3D - 278 489 IPR038718 -
Tpr6g0904 1516 SMART PHD_3 46 91 IPR001965 -
Tpr6g0904 1516 ProSiteProfiles Chromo and chromo shadow domain profile. 177 252 IPR000953 -
Tpr6g0904 1516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 454 IPR027417 -
Tpr6g0904 1516 MobiDBLite consensus disorder prediction 1097 1124 - -
Tpr6g0904 1516 ProSiteProfiles Chromo and chromo shadow domain profile. 104 169 IPR000953 -
Tpr6g0904 1516 SUPERFAMILY Chromo domain-like 169 244 IPR016197 -
Tpr6g0904 1516 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 160 IPR023780 -
Tpr6g0904 1516 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1157 1508 - -
Tpr6g0904 1516 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 26 1121 - -
Tpr6g0904 1516 Coils Coil 1438 1458 - -
Tpr6g0904 1516 ProSitePatterns Zinc finger PHD-type signature. 47 90 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0904 Tpr-Chr6 7891427 7908217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tpr6g0904 SNF2_N 5.6e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0904 - K11643 gmx:100813574 1546.18