Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0899 ATGAAAAATCCATTGGAATTTCCTTCCGTCAGCGGTTCCATAAGAAATCAATTTCGATCCTCATACAAGTGGGAATTGGTCGTTACTTCCTCAATCTCTAGGGGTAGAAATGTCCTGAATTTTCCCAGGGAATACACCAGAAATTGTTTAATGAACTCTGATAGGAAGATCTATCTTATTGATGTTGCATCTGGAAGAGTTTACAATTCAAAGATTTTTACTTCAGGTCAAAATAAAGAAAACAAATATGTTTACTCTTGTTGGAAGCAATTTGTGACTGAGAACAAGTTGAAGTTCAGAGATAAGGTTATCTTCAATGCCACCACCGGTGATAATGTTATCCAAGTCCAGATCCTGCGTCGTCGCCGTCGTTCATGTTAG 381 0.3806 MKNPLEFPSVSGSIRNQFRSSYKWELVVTSSISRGRNVLNFPREYTRNCLMNSDRKIYLIDVASGRVYNSKIFTSGQNKENKYVYSCWKQFVTENKLKFRDKVIFNATTGDNVIQVQILRRRRRSC* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0899 126 SUPERFAMILY DNA-binding pseudobarrel domain 24 123 IPR015300 -
Tpr6g0899 126 Pfam B3 DNA binding domain 28 121 IPR003340 GO:0003677
Tpr6g0899 126 ProSiteProfiles B3 DNA-binding domain profile. 24 122 IPR003340 GO:0003677
Tpr6g0899 126 SMART B3_2 23 122 IPR003340 GO:0003677
Tpr6g0899 126 Gene3D - 13 123 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0899 Tpr-Chr6 7839889 7840586 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g0899 B3 1.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0899 - K18695 mtr:MTR_6g087720 51.9878