Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0895 ATGGCCAAAGTTTGTAAGAAGTTTGACAGTGTTTCTGAGATTTTACCAAACAAGGATTGTGTTCGAATCAAGGTGCGTGTTCTTCGTATCTGGAAGACGTCTTCGTTCCTTAATCCTTCTGAAGTCAATTCAATTGAGATGGTTTTGGTTGATGAAAAGGGTGGAAAGATTCATGCCTCTATTAGGAAGCAGTTTTTATATATGTTTGAGTCTAAAATTGAAGAAGGACAAGTGTATCAGATGTCCTATTTTTCTGTTGTTCCTCAGACTGGTTTCTACAGAACTACTCTACATCCATACAAGCTATTATTCCAAATTAAGACAAAGGTTGTTGCTGTTAAGAGCTCTGATATATCTCATCATGGTCTCACATTGACAAGTTTGGCTGAAGTTTGTAGTCATGTCCATGATTATGAATTTTTAGTTGATGTTATGGGTTTGTTATCTGGAATTTCTGCTGAGAGGGAATATGTTAGGGATGGAAATGTTACAAAGATGGTTGTGTTGGAGTTGACTGATACTAGTGGGAAATGTGAATGTGCTTTGTTTGGGGATTATGTTGATGAGTTAAACAAGAAACTGGGCAAGACATCTGGTGGTCTCCCTGTGGTCGTAATTCAGTTTGCAAAGGTTAAGATATTTAGAGACCAAGCATCCATTCAAAATGTCATCAACACTACAAAGATTTTTGTGAATCCTGATATCCCTGAAGCTGATGCATTTAAGGATAGCATTGGTGTGCATGGTATTATGTTGGATGCCACTGTTTCTGTGATTGGTCCTCGTGCCAAACCTGCTATGGATGAAGAATTTCTGAGGATGTATCCAAAAAAAACTGTATCTGAACTAAGTGAAATGGAAGAGGAAGGGGTTTTTGCTGTTTTTGGGGTGGTTAGTTCTATTGTTCGTGGGGAGGATTGGTGGTATCCTGCATGCAAGTGTCATAAGTCTGTTATTGCTGATTCTGGGGCTTACTTTTGCAATGGATGCAACAAGCATGTTTTTCAAGTTGTTCCAAGGTAA 1023 0.3851 MAKVCKKFDSVSEILPNKDCVRIKVRVLRIWKTSSFLNPSEVNSIEMVLVDEKGGKIHASIRKQFLYMFESKIEEGQVYQMSYFSVVPQTGFYRTTLHPYKLLFQIKTKVVAVKSSDISHHGLTLTSLAEVCSHVHDYEFLVDVMGLLSGISAEREYVRDGNVTKMVVLELTDTSGKCECALFGDYVDELNKKLGKTSGGLPVVVIQFAKVKIFRDQASIQNVINTTKIFVNPDIPEADAFKDSIGVHGIMLDATVSVIGPRAKPAMDEEFLRMYPKKTVSELSEMEEEGVFAVFGVVSSIVRGEDWWYPACKCHKSVIADSGAYFCNGCNKHVFQVVPR* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0895 340 Gene3D - 116 249 IPR012340 -
Tpr6g0895 340 PANTHER REPLICATION FACTOR A 1, RFA1 20 340 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g0895 340 Pfam Domain of unknown function DUF223 46 116 IPR003871 -
Tpr6g0895 340 SUPERFAMILY Nucleic acid-binding proteins 275 335 IPR012340 -
Tpr6g0895 340 CDD RPA1_DBD_B_like 143 244 - -
Tpr6g0895 340 Gene3D - 269 340 IPR012340 -
Tpr6g0895 340 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 340 - -
Tpr6g0895 340 SUPERFAMILY Nucleic acid-binding proteins 7 113 IPR012340 -
Tpr6g0895 340 SUPERFAMILY Nucleic acid-binding proteins 125 253 IPR012340 -
Tpr6g0895 340 CDD RPA1_DBD_A_like 22 110 - -
Tpr6g0895 340 Gene3D - 6 112 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0895 Tpr-Chr6 7829429 7831349 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0895 49 332 Core DNA Replication Machinery Family AT5G08020 25.084 2.07e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0895 - - mtr:MTR_8g062030 401.364