Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0888 ATGGGAAAATTAAGTGCTAGTTCTTGTAAGGGACTTTGGAAAGTGGTGGAGAGAAAAATATTATGGTCACAAAAAGGGGTGAAGCAAGGTCATTTTGTGGTGATTGCAACACAAGGGTGGAAAGCTGAGAGATTTTGTATTGAATTGGGATATTTAGATCATCCTGAATTTGTGAAATTGTTAAAACAAGCTGAAGAAGAGTTTGGGTTTTCTCAAGTTGGAGCACTTGAAATTCCTTGTGAGCCAGATGAGTTGAAGAGAATCATTGGTAGGAAAAAACAACACATCAACAAGGGTGTTACTATTACTTGTTAG 315 0.3714 MGKLSASSCKGLWKVVERKILWSQKGVKQGHFVVIATQGWKAERFCIELGYLDHPEFVKLLKQAEEEFGFSQVGALEIPCEPDELKRIIGRKKQHINKGVTITC* 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0888 104 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 18 104 IPR003676 GO:0009733
Tpr6g0888 104 PANTHER SMALL AUXIN-UP RNA-RELATED 18 104 - -
Tpr6g0888 104 Pfam Auxin responsive protein 24 89 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0888 Tpr-Chr6 7754035 7754349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0888 27 90 Calmodulin-binding Proteins AT4G34750 40.625 2.18e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0888 - K14488 gmx:100795119 139.428