Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0883 ATGTCAAAAGAATCTGAAGAAATTAAAACTAGTGGTGAGCAATGGAAATGGTCTGAAATGCAAGGTCTTGAGCTTGTGAATGATGATAACAATTCTGACCCTTTTAAAGGGAACTTACCAACAGTAATAGAAGAGGGTGTTTCTCAGAATCAAGTTCAAGTTTCCAAGGAAATGGTGGAAACATCAGAAGCTAAGAAAGAGGAGAAGGTTGTTAAGAGTGTTCCTGCTGTTGGGTTTGGAGAGTTATTCAGATTTGCTGATGGGTTGGATTATATTCTAATGACTATTGGAACTGTTGGAGCAATTGTTCATGGTTGTTCTTTGCCTATTTTTCTTAGATTCTTTGCTGATCTTGTTAACTCTTTTGGTTCCAATGCTAATAATTTGGATAAGATGACACAAGAAGTTGTTAAGTATGCATTTTACTTCCTTGTGGTGGGTGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGACCGGAGAGCGTCAATCAACAAAGATGAGGATCAAGTATCTGGAAGCTGCATTGAAACAAGACATTGAATTCTTTGACACCGAAGTTCGAACTTCTGATGTTGTTGCTGCAATCAACACTGATGCTGTGATGGTTCAGGATGCCATTAGTGAGAAGTTGGGAAATTTCATTCACTACATGGCTACTTTTGTTTCTGGTTTTGTTGTTGGATTCACTGCTGTTTGGCAATTGGCTTTGGTTACCCTTGCTGTTGTTCCTATGATAGCTGTTATTGGAGCCATTCACACCACTACTTTGGCTAAGCTCTCTAGTAAAAGCCAAGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGTGCAAATCCGTGTAGTGTTGGCTTTCGTTGGTGAGTCTCGAGCACTACAAGGCTACTCATCAGCCTTGAAGGTTGCTCAGAAGCTTGGCTACAAAACAGGATTAGCAAAGGGAATGGGATTAGGTGCAACTTACTTTGTTGTTTTCTGCTGCTACGCGCTTCTGTTGTGGTATGGAGGCTATCTTGTAAGGCATCACGAAACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTCATGATTGGTGGAATAGGCTTGGGGCAATCTGCACCTAGCATGGCTGCATTTACAAAGGCGAGGGTTGCTGCGGCTAAGATTTTCCGGATAATCGATCACAGTCCTGGTATAGATAGAAACAGTGAATCAGGATTGGAATTGGAGACAGTTACTGGACTTGTGGAACTTAAAAATGTCGACTTTTCTTATCCATCTAGGCCCGACGTTCTGATCCTCAATGATTTCTCCTTGAGTGTTCCTGCCGGAAAGACCATAGCTTTAGTCGGTAGCAGTGGCTCCGGCAAGAGCACTGTTGTTTCCCTTATTGAGAGGTTCTATGACCCAACTTCAGGACAAGTTATGCTAGATGGTCATGACATTAAAACTTTGAAGCTTAAATGGTTGAGGCAACAGATAGGACTAGTGAGCCAAGAACCTGCTTTGTTCGCTACCACGATTCGAGAAAATATACTCTTGGGAAGACCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCGTTCATCATCAAACTTCCTGACGGCTATGAAACTCAGGTAGGAGAAAGAGGGTTACAACTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGTTAAAAAATCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCTGAATCAGAAAAACTGGTGCAAGAAGCACTTGACCGGTTCATGATCGGAAGAACGACTCTTGTAATTGCTCATCGCCTCTCCACAATTCGCAAAGCTGACCTCGTAGCTGTGATTCAACAAGGAAGTGTTTTTGAAATTGGAACTCATGATGAGCTCTTCTCTAAAGGTGAAAATGGAGTCTATGCCAAGCTTATTAAGATGCAGGAGGTTGCCCATGAAACTGCTATGAATAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCAAGAAACTCAGTTAGCTCGCCGATAATTGCGAGGAATTCTTCTTATGGCCGGTCACCGTACTCACGTAGATTGTCCGATTTCTCTACATCAGATTTTAGTTTGTCCCTTGATGCATCATATCCAAATTACAAGCATGAAAAGCTTGCCTTCAAAGATCAAGCCGGTTCCTTCTGGAGACTAGTAAAAATGAACTCTCCTGAATGGCTCTATGCTTTAATTGGTTCAATCGGCTCAATTGTTTGTGGATCGCTTAGTGCTTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTCTATTACAATCCGGACCACAAACACATGATCCGAGAAATAGATAAGTACTGCTACTTATTGATTGGTCTTTCATCAACTGCACTTATCTTCAACACATTGCAACACTTCTTCTGGGATATTGTCGGGGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGACTGCAGTGCTTAAGAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCTAGGATTTCTGCAAGGCTGGCTCTCGATGCCAACAATGTCAGATCAGCCATTGGAGACCGAATTTCAGTCATTGTGCAGAATACTGCACTTATGCTTGTTGCTTGTACTGCAGGTTTTGTGTTGCAGTGGCGTCTCGCCCTTGTCCTCATTGCTGTATTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACCTAGAAGCTGCTCATGCCAAGGCCACACAACTAGCTGGAGAGGCTATAGCCAATGTAAGAACTGTTGCAGCCTTCAACTCAGAATCGAAAATTGTTCGCCTTTTCGCCTCCAACCTTGAAACTCCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCCGGAAGTGGATATGGAATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTTGGTCTTTGGTACGCTTCTTGGCTAGTGAAACACGGAATATCCGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTCATGGTCTCTGCCAATGGTGCTGCCGAGACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGATCAGTTTTTGATCTCCTCGACCGTCGAACCGAGATTGAACCAGATGATCAAGATGCTACTCCAGTTCCTGACCGTCTCCGCGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCCACTAGACCCGATATGCCGGTTTTCCGTGACCTTAATCTTCGTATCCGAGCTGGCAAAACGCTTGCCCTTGTTGGACCTAGTGGCTGCGGTAAGAGCTCGGTGATTGCACTTATACAGAGATTCTATGATCCAACGTCTGGCCGGGTAATGATTGATGGAAAAGACATCAGAAAATACAACCTCAAATCCTTAAGAAGACACATTTCTGTAGTACCTCAAGAGCCGTGCCTCTTTGCTACTACTATTTATGAAAATATTGCATATGGCCATGACTCAGCAACAGAAGCCGAGATAATCGAAGCAGCAACACTTGCTAATGCTCACAAGTTCATATCTTCTCTACCAGCCGGATACAAAACATTTGTAGGGGAGAGAGGCATTCAACTCTCCGGGGGACAAAAACAAAGAATAGCAGTTGCTCGTGCTTTTTTGAGGAAAGCCGAGCTTATGCTTCTTGACGAGGCAACAAGTGCACTTGATGCTGAGTCAGAGAGGTCTGTTCAAGAGGCTCTAGACCGCGCTTCAACGGGGAAAACAACCATCATTGTTGCACATAGATTATCAACTATAAGGAATGCCAATGTGATCGCTGTGATTGATGATGGTAAAGTAGCTGAACAAGGTTCACATTCACAGTTGATGAAAAATCACCAGGATGGAATATATGCGCGCATGATTCAATTACAAAGGTTTACACACAATGAGGTAATTGGTATGGCATCTAGTTCAACTTCTTCAACATGA 3993 0.4328 MSKESEEIKTSGEQWKWSEMQGLELVNDDNNSDPFKGNLPTVIEEGVSQNQVQVSKEMVETSEAKKEEKVVKSVPAVGFGELFRFADGLDYILMTIGTVGAIVHGCSLPIFLRFFADLVNSFGSNANNLDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKMRIKYLEAALKQDIEFFDTEVRTSDVVAAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQGYSSALKVAQKLGYKTGLAKGMGLGATYFVVFCCYALLLWYGGYLVRHHETNGGLAIATMFAVMIGGIGLGQSAPSMAAFTKARVAAAKIFRIIDHSPGIDRNSESGLELETVTGLVELKNVDFSYPSRPDVLILNDFSLSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVMLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVIQQGSVFEIGTHDELFSKGENGVYAKLIKMQEVAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYKHEKLAFKDQAGSFWRLVKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHKHMIREIDKYCYLLIGLSSTALIFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARISARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSESKIVRLFASNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRIRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPAGYKTFVGERGIQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASTGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLMKNHQDGIYARMIQLQRFTHNEVIGMASSSTSST* 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0883 1330 SMART AAA_5 445 631 IPR003593 -
Tpr6g0883 1330 SMART AAA_5 1100 1292 IPR003593 -
Tpr6g0883 1330 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 94 1315 IPR039421 -
Tpr6g0883 1330 CDD ABC_6TM_Pgp_ABCB1_D1_like 94 391 - -
Tpr6g0883 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 657 IPR027417 -
Tpr6g0883 1330 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 750 1037 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g0883 1330 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 96 383 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g0883 1330 Gene3D - 408 658 IPR027417 -
Tpr6g0883 1330 Gene3D - 1062 1313 IPR027417 -
Tpr6g0883 1330 ProSitePatterns ABC transporters family signature. 1212 1226 IPR017871 GO:0005524
Tpr6g0883 1330 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1073 1309 IPR003439 GO:0005524
Tpr6g0883 1330 CDD ABC_6TM_Pgp_ABCB1_D2_like 740 1055 - -
Tpr6g0883 1330 CDD ABC_MTABC3_MDL1_MDL2 1073 1312 - -
Tpr6g0883 1330 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 94 1315 - -
Tpr6g0883 1330 Gene3D ABC transporter type 1, transmembrane domain 1039 1315 IPR036640 GO:0005524|GO:0016021
Tpr6g0883 1330 Gene3D ABC transporter type 1, transmembrane domain 81 670 IPR036640 GO:0005524|GO:0016021
Tpr6g0883 1330 Gene3D ABC transporter type 1, transmembrane domain 730 1038 IPR036640 GO:0005524|GO:0016021
Tpr6g0883 1330 SUPERFAMILY ABC transporter transmembrane region 737 1057 IPR036640 GO:0005524|GO:0016021
Tpr6g0883 1330 CDD ABC_MTABC3_MDL1_MDL2 418 657 - -
Tpr6g0883 1330 SUPERFAMILY ABC transporter transmembrane region 82 396 IPR036640 GO:0005524|GO:0016021
Tpr6g0883 1330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1064 1312 IPR027417 -
Tpr6g0883 1330 Pfam ABC transporter 1092 1240 IPR003439 GO:0005524
Tpr6g0883 1330 Pfam ABC transporter 436 585 IPR003439 GO:0005524
Tpr6g0883 1330 ProSitePatterns ABC transporters family signature. 557 571 IPR017871 GO:0005524
Tpr6g0883 1330 Pfam ABC transporter transmembrane region 94 367 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g0883 1330 Pfam ABC transporter transmembrane region 751 1020 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tpr6g0883 1330 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 418 654 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0883 Tpr-Chr6 7662936 7669585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0883 96 674 Calmodulin-binding Proteins AT2G36910 39.415 4.81e-120 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0883 K05658 - gmx:100814667 2312.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0883 6 7662936 7669585 Tpr6g0883 6 7662936 7669585 ECH