Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0879 ATGGGGAGAACTCCTTGCTGTGACAAGGCTAATGTAAAGAAAGGTCCATGGTCTCCAGAAGAAGATGCAAAACTAAAGGATTACATAGAGAAACATGGAACTGGTGGCAATTGGATTACTCTGCCAAAAAGAGTTGGTTTGACAAGGTGTGGAAAAAGCTGTAGACTAAGATGGCTTAATTATCTTAGACCAAACATTAAACATGGTGAATTCTCTGACTCAGAAGATAAAATAATATGCACCCTTTTTGCTAGCATTGGAAGCAGGTGGTCAATAATAGCATCTAAGTTACAAGGCCGAACCGACAATGATGTAAAGAATTACTGGAACACAAAACTAAAGAAAAAATTTATGTTCATAAATCATTCAATGGAGATGAAATCTCAACAAGTTACCCTTTTATCCATCCTTCAAAGTTCAACATCAACATCTCAATCATTATCATTCACAAACAACAAAAACAACTCATACTATCATCACTCCAATGGTTCTTTCACAAGTTCCTTTTCCAACTCATCAACCTCTTCAAGTCTTTTAAGTGGAAACTCTTCTACTTCTGCAGCACAAGAAAGTTTGATTGGTTCATCTCAGAAGTGTGGTGATGCAGCTTTTGTAGAGCAGAATATTGGTGATGTTAGTTATATCTACAATGAGGTTGAAGATAGTGAGAAGTTGATGTTTTCCAATGGTGGTAGTGTTAATGGATTTTGGGAAGAAAATCCATTGGATTATGGTGTAATAAGCACAACTTCTACTAGTAGTTGCAACAACTTTTTGTTTGATGTGTAA 789 0.3599 MGRTPCCDKANVKKGPWSPEEDAKLKDYIEKHGTGGNWITLPKRVGLTRCGKSCRLRWLNYLRPNIKHGEFSDSEDKIICTLFASIGSRWSIIASKLQGRTDNDVKNYWNTKLKKKFMFINHSMEMKSQQVTLLSILQSSTSTSQSLSFTNNKNNSYYHHSNGSFTSSFSNSSTSSSLLSGNSSTSAAQESLIGSSQKCGDAAFVEQNIGDVSYIYNEVEDSEKLMFSNGGSVNGFWEENPLDYGVISTTSTSSCNNFLFDV* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0879 262 SMART sant 67 115 IPR001005 -
Tpr6g0879 262 SMART sant 13 64 IPR001005 -
Tpr6g0879 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tpr6g0879 262 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Tpr6g0879 262 CDD SANT 16 62 IPR001005 -
Tpr6g0879 262 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Tpr6g0879 262 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Tpr6g0879 262 Gene3D - 7 68 - -
Tpr6g0879 262 PANTHER OS09G0431300 PROTEIN 1 191 - -
Tpr6g0879 262 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Tpr6g0879 262 Gene3D - 69 154 - -
Tpr6g0879 262 PANTHER OS09G0431300 PROTEIN 1 191 - -
Tpr6g0879 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tpr6g0879 262 CDD SANT 70 113 IPR001005 -
Tpr6g0879 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0879 Tpr-Chr6 7574423 7576245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0879 1 118 MYB Transcription Factor Family AT2G36890 81.356 2.03e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr6g0879 Myb_DNA-binding 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0879 K09422 - gmx:778084 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0879 6 7574423 7576245 Tpr6g0879 6 7574423 7576245 ECH