Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0872 ATGAATTTTCCATTCGACGAGTGGCCCTACAACGACCCCACTGTTCCCCCCGAATTGCTCAACTTCAACGAGAGCGAAATTCCGACCAGAGAAGATCTAATTGCCGCCGGAGCAGATCGTCGATTCATCAATTTAGTATTTGATGGACACTCCGGCAACGAAGAAGATAGCGACGAAGAAGAAGATGAAGACGAAGAAGAGGATGAAGAAGATGAAGAAGACGATGAAGAGTATGTTCCCAACGTACCGCCGGCATCTAGGGTTTCTCACGAAGCTCATCGGAATTCTACATCTGATGAAGTAATTGTTATTCCCGATGATGACCGGCAAAATTCAGTTGAAGATGAGAGAAATAAACGCCGCAGAATCGAAGCAGGAGAAGCTTCGTGTTCTTCGATTCCAATCGAAAGCGCTGCCGACTGTAGCCAAGATAATGACCACCGTACCGACATTGACGGCCTCATTTGCCCTATTTGTATGGATGCTTGGACCGAAAATGGGGATCATCACGTCTGTTGTCTTCCTTGTGGACATATTTATGGCATGTCTTGCATTAAAAAGTGGCTTCAACAGCGAAAAAATTCGGGGAAGTGTCCTCAATGTAATATGAAATGTTCAATGAAGGATGTGAGGAAACTATATGCTTCTCGAATAGTTGCTGTTGATGAAGAATCTCAGAAGAGAATTCGGTCACTTGAGAGCAAATGTGTGTCTCTTGAGAGTAAGGATGGTAGTTGGCGCAAGAAAGAAATGGGGTGGAAGAAGAGGGAAGCTGAACTGCATCTTGATGTTCAGAAACTTACCAAGAGAAACACTTATTTGGAGCAGCTGGTACTAGATATGCAGCGTAGACAATCTGAATTAATGGTTGCCGGTGGGAACTCTCAATGGAGATATGATTCCGAGCGCAACTATAACCCAATGTCCCAGGGAAAAGGATCGTTTTGCAATTTTGAATGTCAGAAAACATTTCGCCTAGAAGGTGCTCGTGTGTTTGATATGGACACTTCTAATCAAATTTTATTAATCGCACGAAAGGAAAAAGCAATGGGTGATGATGTGCACTTGCTAACTAAAATGAGCTTGATATCTCCATTTGAGATGCAAGATATTGTACTACCATCATCTACAAATGGTATTAGAGACCTGCATATTTCTCCTTTTGATAGTAGACAGGCCCTCTATGCTTCATTTGGGAAGACATTATCAGTGCTCAGCCTCGACAGCGGCACCCCTGTTCTCAATTATGATCTTCAGGTTCCTGCTTGGTCGTGTTCATGGGATCACATCAGTACACATAACATATATGCTGGATTGCAGAATGGTTCTGTCCTGGTGTTTGACATGAGACAAACTGCAGGACCCTTAAAATCTTTAGCTGGGTTGACTAGCAACCCTGTTCATAGTTTGCAATCTCTTGCCCAAACAACGAGTCTCTCTTCTGGTGCCAGAACCATCCTATCTGCATCTGCTATCGGCCCTTGTCAGTGGGACATTGATTCTGAAGAACGGCCGTTTATGGTTCCCGGGACCGATGATCAAGGAGTTTGTATATCCCTTGCCTATTGTCCGAGCAGCGATGACATTGTTGTTTCATACCGTCCAAAGTTCAACATGGATGTGCCTCTTTCTCCACCATCGCCCACTCCTTCATATGTTACTGGACAAGGAGTACAGGGCTCTAATGTATTGTTAAAGAGAATGGGCGGTAATGATTTCCAAAAGATGGGTTCCTCGTATGCCAATGTAAGTAAAATTCGACTACCAAAATCTGTAATTATAGACATAGAGAATCAGAATAGAATGTTTGCATCTGGAGATGAAGCTACATGTGACTTGGTCTTGCAAGACTTGCCATCTTTTAGTGTTATTCAGCGATTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTACTCACCTAGTTATGGAATGCTTGGCTGCTTAAGTGAGAATTTATTGCAACTTTTCCGTACCAATCTCTCGTGA 1986 0.434 MNFPFDEWPYNDPTVPPELLNFNESEIPTREDLIAAGADRRFINLVFDGHSGNEEDSDEEEDEDEEEDEEDEEDDEEYVPNVPPASRVSHEAHRNSTSDEVIVIPDDDRQNSVEDERNKRRRIEAGEASCSSIPIESAADCSQDNDHRTDIDGLICPICMDAWTENGDHHVCCLPCGHIYGMSCIKKWLQQRKNSGKCPQCNMKCSMKDVRKLYASRIVAVDEESQKRIRSLESKCVSLESKDGSWRKKEMGWKKREAELHLDVQKLTKRNTYLEQLVLDMQRRQSELMVAGGNSQWRYDSERNYNPMSQGKGSFCNFECQKTFRLEGARVFDMDTSNQILLIARKEKAMGDDVHLLTKMSLISPFEMQDIVLPSSTNGIRDLHISPFDSRQALYASFGKTLSVLSLDSGTPVLNYDLQVPAWSCSWDHISTHNIYAGLQNGSVLVFDMRQTAGPLKSLAGLTSNPVHSLQSLAQTTSLSSGARTILSASAIGPCQWDIDSEERPFMVPGTDDQGVCISLAYCPSSDDIVVSYRPKFNMDVPLSPPSPTPSYVTGQGVQGSNVLLKRMGGNDFQKMGSSYANVSKIRLPKSVIIDIENQNRMFASGDEATCDLVLQDLPSFSVIQRFKMPAQARDIRYSPSYGMLGCLSENLLQLFRTNLS* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0872 661 Coils Coil 222 242 - -
Tpr6g0872 661 SMART ring_2 156 201 IPR001841 -
Tpr6g0872 661 CDD mRING-C3HGC3_RFWD3 152 202 - -
Tpr6g0872 661 Gene3D - 318 562 IPR015943 GO:0005515
Tpr6g0872 661 SUPERFAMILY RING/U-box 150 208 - -
Tpr6g0872 661 SUPERFAMILY WD40 repeat-like 372 656 IPR036322 GO:0005515
Tpr6g0872 661 MobiDBLite consensus disorder prediction 45 126 - -
Tpr6g0872 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 271 IPR013083 -
Tpr6g0872 661 MobiDBLite consensus disorder prediction 92 126 - -
Tpr6g0872 661 Pfam Ring finger domain 156 202 IPR001841 -
Tpr6g0872 661 ProSiteProfiles Zinc finger RING-type profile. 156 202 IPR001841 -
Tpr6g0872 661 PANTHER RFWD3 PROTEIN 54 657 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Tpr6g0872 661 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 54 657 - -
Tpr6g0872 661 MobiDBLite consensus disorder prediction 53 79 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0872 118 214 C3H Transcription Factor Family AT5G48655 29.524 4.88e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0872 K15691 - gmx:100818898 717.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0872 6 7498442 7503878 Tpr6g0872 6 7498442 7503878 ECH