Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0863 ATGTTGAAAACAATATGCATTTTCCTAATTATCTTTGTTTTGAGTTCATTTTCAACACTTGGAACAGCAATGCTGAACTTAACAATTCCTGGAACACACCCTGATCCTGAAGCTGTTGCTCATGAAGTTCATAGGAAGGTGAATGCTTCAATGGCGAGAAGGGAAATGCTATCTTCTGGATCAGCATGCATGACAGGAAACCCGATTGACGATTGTTGGAAATGCGACCCAGAATGGCCAAACAATCGACAAAGATTAGCAGATTGTGCAATAGGGTTTGGTCAGTATGCTAAAGGAGGAAAAGGTGGCGAATATTATGTTGTAACAGATTCCTCAGATGATGATCCTGTTACTCCAAAACCTGGTACATTAAGATATGCTGTGATAAAAAATGAACCATTGTGGATAGTGTTTCCTAGTAACATGTTGATTAAGCTAAAGCAAGAATTGATTTTTAATAGTTATAAGACTATTGATGGACGTGGTGCTGATGTTCATATTGTTGGAGGAGGGTGCATTACTTTGCAGTTTATAAGTAATGTTATTATACATAACATTCATATTCATCATTGTCATCCCTCAGGAAACACAAACGTGAGATCAAGTCCAGAACACTACGGCTACAGAACAATGTCGGACGGAGACGGAATATCCATCTTCGGTTCAAAAGACATATGGATCGACCACTGCACACTCTCACATTGCAAAGACGGACTAATAGACGCAGTAATGGGATCCACGGGAATAACAATATCCAACAACTTCATGTCACACCACAACGAAGTCATGCTCCTAGGACACAGCGACGACTACCTCCCTGACTCAGGAATGCAAGTCACAATAGCATTCAACCATTTCGGTCAGGAGCTCGTTCAGAGGATGCCGCGTTGCAGAAGAGGATACATCCACGTGGTCAACAATGATTATACGCAGTGGGAGATGTATGCCATCGGTGGGAGTGGAGAACCAACTATTAATAGTCAAGGAAATCGTTATGCTGCGCCTGTTAATCTTTTTGCTAAAGAGGTTACTAAGAGGGTTGAAACAGAACAAAATAAATGGAAAGGGTGGAATTGGAGGTCTGAAGGTGATGTTATGATTAATGGTGCATTTTTTGTTACTTCTGGTGAAAGTCTAGAGGTTAAGTATGAGAAGGCTTTTAGTGTTGAACCTCAATCTGCTGATCGGATTGTTCTTCTTACCATGAACTCTGGTGTTCTTGGCAATGCAAGGGACAATAACCTGGGGATGTGGAGCAGAGGACCAAGTAGCAACGATGATGGCATTTTGGATTCTGGACCGGATTACACAGACGAAATGTCGGCCAGTGGGCGAGTGTTGCCGTGTTCTTTTACTATGCTGATGGGCGTCTTGTTGTCTTTTCGGGTGATACTGTTAACATTTATTCAATGA 1413 0.4168 MLKTICIFLIIFVLSSFSTLGTAMLNLTIPGTHPDPEAVAHEVHRKVNASMARREMLSSGSACMTGNPIDDCWKCDPEWPNNRQRLADCAIGFGQYAKGGKGGEYYVVTDSSDDDPVTPKPGTLRYAVIKNEPLWIVFPSNMLIKLKQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTMSDGDGISIFGSKDIWIDHCTLSHCKDGLIDAVMGSTGITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGQELVQRMPRCRRGYIHVVNNDYTQWEMYAIGGSGEPTINSQGNRYAAPVNLFAKEVTKRVETEQNKWKGWNWRSEGDVMINGAFFVTSGESLEVKYEKAFSVEPQSADRIVLLTMNSGVLGNARDNNLGMWSRGPSSNDDGILDSGPDYTDEMSASGRVLPCSFTMLMGVLLSFRVILLTFIQ* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0863 470 SMART amb_all 141 338 IPR002022 -
Tpr6g0863 470 Gene3D - 66 408 IPR012334 -
Tpr6g0863 470 SUPERFAMILY Pectin lyase-like 62 380 IPR011050 -
Tpr6g0863 470 PANTHER PECTATE LYASE 18-RELATED 3 424 IPR045032 GO:0030570
Tpr6g0863 470 PANTHER PECTATE LYASE 12-RELATED 3 424 - -
Tpr6g0863 470 Pfam Pectate lyase 147 326 IPR002022 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 89 106 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 113 138 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 149 165 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 213 234 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 293 312 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 315 334 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 357 381 IPR018082 -
Tpr6g0863 470 PRINTS Pollen allergen Amb family signature 386 409 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0863 Tpr-Chr6 7432744 7437365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0863 1 470 Polysaccharide Lyase AT3G53190 71.102 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0863 K01728 - gmx:100775595 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0863 6 7432744 7437365 Tpr6g0863 6 7432744 7437365 ECH