Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0860 ATGGAAGAATCTCATAACAACGTTGTTCCTGTCGCTCCATCTGAAACCGGTTCTGGACAATACGGGTGTTCGCATTATAGAAGGAGATGCAAAATCATAGCACCTTGTTGCAATCAAATTTTTGATTGCAGACATTGTCATAACGAATCCCAGAATTCTGTTCAAGTTGATCTTGCTAATATGCACGACATTCCTCGCCATGATGTTAAGAGGGTTATCTGTTCCTTGTGTAGCACCGAGCAAGATGTTCAACAGGTTTGCATTCAATGTGGTGTTTGCATGGGTAGATACTTTTGCTCCAAATGCAAGTTCTTCGATGATGATGTATCAAAAAAGCAATACCATTGCGATGAATGTGGCATATGCAGAACTGGAGGTGAAGAGAACTTTTTCCACTGCAAGAAATGTGGTAAGCTTTTGATTGAACATTGCTTCCCCAAAGCAACAAACCCTTTTACCTGTGTCAGTTCAGTATTCAAACTGAGTGTTTCTCTAACGAAATACCTTGTCAATTGTCATGATCTCTTACTGTCGGTAGATTGTTGCTATTCGTCGTCGATGAAGGATTCACACCGTTGTATTGAAAAAGCAATGCATCAGAACTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACAACGAAAGATATCACTGTATTGCCATGTGGCCACACCATACACTTGGGTTGTGTGAGAGAAATGCAAAAGCATTGCCAGTATTCATGCCCTGTTTGTTCAAAATCATTCTGTGACATGTCGCGTGTGTGGGAAAAAATGGATGAGGAGCTTGCATCGACGCCTATGCCTGAAATGTTTCAAAACAAGATGGTTTGGATTCTATGCAATGACTGCGGAGAAACATCTGAAGTAAAATTTCATATTATAGCGCACAAGTGCCTTAAATGCAAGTCCTACAACACCAGAAGGACACAAGCCGCGTCTGCACCGTGCTTGTCAAGAATGGAAGAGATGGTTAGATGA 978 0.4131 MEESHNNVVPVAPSETGSGQYGCSHYRRRCKIIAPCCNQIFDCRHCHNESQNSVQVDLANMHDIPRHDVKRVICSLCSTEQDVQQVCIQCGVCMGRYFCSKCKFFDDDVSKKQYHCDECGICRTGGEENFFHCKKCGKLLIEHCFPKATNPFTCVSSVFKLSVSLTKYLVNCHDLLLSVDCCYSSSMKDSHRCIEKAMHQNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMQKHCQYSCPVCSKSFCDMSRVWEKMDEELASTPMPEMFQNKMVWILCNDCGETSEVKFHIIAHKCLKCKSYNTRRTQAASAPCLSRMEEMVR* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0860 325 ProSiteProfiles Zinc finger CHY-type profile. 16 92 IPR008913 GO:0008270
Tpr6g0860 325 Gene3D - 273 315 - -
Tpr6g0860 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 179 324 - -
Tpr6g0860 325 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RZFP34 10 138 - -
Tpr6g0860 325 SUPERFAMILY CHY zinc finger-like 18 94 IPR037274 GO:0008270
Tpr6g0860 325 Pfam CHY zinc finger 23 104 IPR008913 GO:0008270
Tpr6g0860 325 SUPERFAMILY Zinc hairpin stack 95 138 IPR037275 -
Tpr6g0860 325 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 10 138 - -
Tpr6g0860 325 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 179 324 - -
Tpr6g0860 325 SMART ring_2 202 244 IPR001841 -
Tpr6g0860 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 265 IPR013083 -
Tpr6g0860 325 Pfam Zinc-ribbon 249 307 IPR039512 -
Tpr6g0860 325 ProSiteProfiles Zinc finger RING-type profile. 202 245 IPR001841 -
Tpr6g0860 325 ProSiteProfiles Zinc finger CTCHY-type profile. 94 162 IPR017921 -
Tpr6g0860 325 SUPERFAMILY RING/U-box 200 250 - -
Tpr6g0860 325 Pfam Zinc finger, C3HC4 type (RING finger) 202 244 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0860 Tpr-Chr6 7405712 7408936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0860 21 315 C2H2 Transcription Factor Family AT3G18290 33.223 5.00e-47 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0860 K10144 - mnt:21405387 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0860 6 7405712 7408936 Tpr6g0860 6 7405712 7408936 ECH