Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0842 ATGCCGAAGGATAAACTTGATAACAGGGAACCACAATGGGCTAGTGTGAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCCCCGGAGTCTTGGAGTGCATATATCAAAGTCAAATAAGCCCTGGGAAGCTAAACTGCCACCAAATTTTGACAGAAATGGATGTGGAATCCAGAAGTTTATCCGTGCCAAATATGTGGAGAAACGATGGGCTTTACAAGGTGAACTACAAGCTACAAAGTCAGCTGAAATAAAGTTGAACTTGAACTTCAAAATTTCACCACCTACTGGGGCCAAGAATGGTATTCAAAAATCTAGGAGATTGTCTCTTGAGGAAAGCATTCTTGTGAATCACATGCCACAAATTCGGCCTCCAATACCAAAATTTAATGAGGGTCCCTTAGATTTAAAAATGAAGAATTCACCACCAATAAAGAGGCCATCAGCATCACTTGATTTTGATAAACCCATTGGAAATAGCAACGGTACCGTCGATCTTTTTAACTTGCTTTCCTTCGACGAAGATAAAAAGAATATATCAACTACACCTTCTAGCTGGACAATATTTGATTGA 579 0.3921 MPKDKLDNREPQWASVNLGIFICMQCSGIPRSLGVHISKSNKPWEAKLPPNFDRNGCGIQKFIRAKYVEKRWALQGELQATKSAEIKLNLNFKISPPTGAKNGIQKSRRLSLEESILVNHMPQIRPPIPKFNEGPLDLKMKNSPPIKRPSASLDFDKPIGNSNGTVDLFNLLSFDEDKKNISTTPSSWTIFD* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0842 192 Gene3D Arf GTPase activating protein 7 42 IPR038508 -
Tpr6g0842 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 8 39 - -
Tpr6g0842 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD15-RELATED 39 192 - -
Tpr6g0842 192 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 72 IPR001164 GO:0005096
Tpr6g0842 192 SMART arf_gap_3 5 80 IPR001164 GO:0005096
Tpr6g0842 192 Pfam Putative GTPase activating protein for Arf 8 39 IPR001164 GO:0005096
Tpr6g0842 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 39 192 IPR044520 GO:0005096
Tpr6g0842 192 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 8 39 IPR044520 GO:0005096
Tpr6g0842 192 SUPERFAMILY ArfGap/RecO-like zinc finger 8 74 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0842 Tpr-Chr6 7239551 7251805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0842 10 67 C2H2 Transcription Factor Family AT4G05330 37.500 1.69e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0842 K12486 - gmx:100802691 231.106