Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0840 ATGGAGGCTTCTGTCAAGCCAGAATCGGAATCCACAACTGTTTCTCTTGATCAGTCTCACGACGAACGGAAAAATTCTACTGTCAATGGTTGCATTGTTTATACTCGAGTCAAGAGGTCTCTCATTTCTTGTAACACTTTTTCCAAAGATGTTGATTCCAAGAGATTTAAGGAGAATGCTGAGGTTCCGCTTGAATTGGATAATGAAATCGGTTGCTGCACGGTTGGTAGGGATGATGAGCTGAAGACTGAGCCTCATGAGGTTCCGGTGACAACGTTCAAGCGGATTACAAGATCGGCTATGAAAGCGAAGGTTGAGTCCGGTGAGGAGACTGTGAGTGTGTTAGAACAACAAGGTGAAGCAGTTGGAACTGTTAATAAAGATGATGGTAAGGTGCCAGTGAGAAATTTCAAGCGAATTACACGTTCGGGGATGAAAGAAAAGGTTGAGTCTGGTGAGGATAAGGTGAATGTGTTAGAACAACAAGGTGCTGCTGTTGTTGCAAATGCAAGTGGTAAAAGCAATGGTAAGGTGTCTGTGAAGAGTTTCAAGCGGCTTACACGATCAAATATGAAATTAGAGGTTGAGTCTGGTGAGGATAAGGTGACTGACTTAGAACAGCAGGGTACTGCTATTGCAAGTGGTGAAGTTGATAGGAGTTTCAAGCGGGTTACGCGATCGGCAGCAATGAAAGAGGGTGAGGAGATAGTGACAGAGTTAGAACAGCATGCTTCTGTGGCTGCCAGTGAAATTGATGGTGCATTCCCTGTTTCGAGAAACAAGATGGAGTTGAAAATGTCAAAGAAGATTGTGGTCAATAAGAAGCCTAAAACAGTCAAGGAGCTCTTTCTTACTGGTTTACTTGATGGTGTCTCTGTGGTTTACATTGGCGGCATTAATAAGGCTCCAGGATTAAGGGGTGTTATAAGAGATGGAGGAATATTATGTTCATGCTGTCTCTGTAATGGACGCAAGGTTATTCCACCTTCCCAGTTTGAGATCCATGCTTGCAAAAAATATAAGAGAGCAGTAGAGTATATTTGCCTTGAAAATGGGAAGAGCCTGCTGGATCTGTTGAGAGCGTGCAGGGGAGCTCCTCTGCATGCTTTGGAGGCAACAATTCAAAACTTCGTTTGTTCAGCACCCGAGGAAAAATATTTTACTTGTAAAAGGTGCAAAGGATGTTTTCCTTCATGTATGAAAAGAGTGGGACCTATATGCTGTTCTTGTGTAGAATCAAGTAAACCTGAAGAAACTGCTAAGAATGTAGTTGGCAAAAGAATCAGGTCTCCTAGACCAGTGCTGGCCTCCAAGTCATCCTGTGCTTTTGAGCTGTCTATCTCTTCAAAAAGTAAGATACACAAGAAGAAAAGAACAAAGTCATCAATAAGGGTCCGCAGCTCAAATTCTTCCAAGAGTGCTTCTGCGCCCAGTTTACTGGAGAAGAAAATTACGCCGATGACGGAAAAGAAGTCATCATCCGTAAAGTTGAAGACCACTTCAAATTCAAATTGTTTATCTCCACAAAATAATAGTCAATGGAAGATAACTAAGAAGGATCATCGGCTGCACAAGTTAGTATTTGAGGAAAATGGATTGCCTGATGGAACTGAAGTAGCTTATTATGCAGGCGGACAGAAATTGCTTGAAGGTTTCAAAAGGGGCTCTGGAATTGTTTGCAGATGCTGCAACACTGAGATCAGCCCCTCACAGTTTGAGGTCCATGCAGGCTGGGCTTCTCGCAAGAAACCTTATGCATACATTTACACATCAAATGGCGTGTCTCTCCATGAATTATCAATATCTCTCTCAAAAGGCAAAAAATACTCTGCAAATGACAATGATGATCTATGCGTTGTTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGAGCCTTTCATAAAGAATGTGCATCTCTATCGAGTATTCCACGTGGTAAATGGTACTGTCAATTTTGCCAAAACATGTTCCAGAGGGAAAAGTTTGTCGCATACAATGTCAATGCTTTTGCTGCTGGAAGGGTTGAAGGAGTTGATCCTATTGAGCAAATCACCAAGAGATGCATTCGCATAGTCAAAGACATTGATGCTGAGCTTAGTGGGTGTGCTTTATGCAGGGGGGTTGGCTTCAGCAGATCTGGCTTTGGTCCACGCACAATAATATTTTGTGATCAGTGTGAAAAGGAGTATCATGTTGGCTGTTTGAGGGATCACAAGATGGCATTTCTAAAGGGATTGCCAAAAGGTAACTGGCTTTGCTGCAATGATTGCACGAGAATACATTCTACTTTGGAGAACGTTTTAGTTAGAGGGTATGAGAGACTCCCTGAATCTCTATTGGCTGTTATAAAGAAAAAGCAAGAGGTAAAAGGATTGGATCCCATGAATGATATCGATGTGAAATGGAGGCTTCTTAGTGGAAAAAACGCTTCTCCCGAAACTAGACCATTGCTTTTGGAGGCTATCTCTATCTTTCATGAATGCTTTGATCCTATAGTTGATGCAGCTAGCGGACGCGACCTTATTCGAGCAATGGTTTATGGAAAGAGTGTACAGGGGCAAGACTTTGGAGGAATGTATTGTGCATTACTGATAGTCAATTCATCTGTGGTATCTGCGGGAATGCTTCGAATCTTCGGCACTGATATTGCTGAACTTCCTTTAGTTGCAACAAGTAACAGTCACCATGGGAAGGGCTACTTCCAAACACTTTTATCCTGCATTGAGAGGCTATTGGCTTTCATGAAAGTAAAGAACCTTGTGCTACCAGCTGCAGAAGAAGCACAGTCCATTTGGACCGATAAATTTGGGTTTAGCAAGATTAAACCAGACCAGCTTGCCAACTACAGAAGGAACTGCAATCAGTTTGTGACCTTCCAAGGGACAAATATGCTTCATAAAATGGTGCCTCCATGTCGAATCATCAATAATCATCCCTGA 2952 0.4245 MEASVKPESESTTVSLDQSHDERKNSTVNGCIVYTRVKRSLISCNTFSKDVDSKRFKENAEVPLELDNEIGCCTVGRDDELKTEPHEVPVTTFKRITRSAMKAKVESGEETVSVLEQQGEAVGTVNKDDGKVPVRNFKRITRSGMKEKVESGEDKVNVLEQQGAAVVANASGKSNGKVSVKSFKRLTRSNMKLEVESGEDKVTDLEQQGTAIASGEVDRSFKRVTRSAAMKEGEEIVTELEQHASVAASEIDGAFPVSRNKMELKMSKKIVVNKKPKTVKELFLTGLLDGVSVVYIGGINKAPGLRGVIRDGGILCSCCLCNGRKVIPPSQFEIHACKKYKRAVEYICLENGKSLLDLLRACRGAPLHALEATIQNFVCSAPEEKYFTCKRCKGCFPSCMKRVGPICCSCVESSKPEETAKNVVGKRIRSPRPVLASKSSCAFELSISSKSKIHKKKRTKSSIRVRSSNSSKSASAPSLLEKKITPMTEKKSSSVKLKTTSNSNCLSPQNNSQWKITKKDHRLHKLVFEENGLPDGTEVAYYAGGQKLLEGFKRGSGIVCRCCNTEISPSQFEVHAGWASRKKPYAYIYTSNGVSLHELSISLSKGKKYSANDNDDLCVVCWDGGNLLLCDGCPRAFHKECASLSSIPRGKWYCQFCQNMFQREKFVAYNVNAFAAGRVEGVDPIEQITKRCIRIVKDIDAELSGCALCRGVGFSRSGFGPRTIIFCDQCEKEYHVGCLRDHKMAFLKGLPKGNWLCCNDCTRIHSTLENVLVRGYERLPESLLAVIKKKQEVKGLDPMNDIDVKWRLLSGKNASPETRPLLLEAISIFHECFDPIVDAASGRDLIRAMVYGKSVQGQDFGGMYCALLIVNSSVVSAGMLRIFGTDIAELPLVATSNSHHGKGYFQTLLSCIERLLAFMKVKNLVLPAAEEAQSIWTDKFGFSKIKPDQLANYRRNCNQFVTFQGTNMLHKMVPPCRIINNHP* 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0840 983 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 11 979 - -
Tpr6g0840 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Tpr6g0840 983 Coils Coil 142 162 - -
Tpr6g0840 983 ProSitePatterns Zinc finger PHD-type signature. 618 657 IPR019786 -
Tpr6g0840 983 SUPERFAMILY FYVE/PHD zinc finger 608 663 IPR011011 -
Tpr6g0840 983 ProSiteProfiles Zinc finger PHD-type profile. 615 660 IPR019787 -
Tpr6g0840 983 CDD PHD1_AIRE 617 657 - -
Tpr6g0840 983 PANTHER AUTOIMMUNE REGULATOR 11 979 - -
Tpr6g0840 983 MobiDBLite consensus disorder prediction 1 24 - -
Tpr6g0840 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 603 695 IPR013083 -
Tpr6g0840 983 Coils Coil 188 208 - -
Tpr6g0840 983 Pfam Tify domain binding domain 307 362 IPR032308 -
Tpr6g0840 983 Pfam Tify domain binding domain 552 599 IPR032308 -
Tpr6g0840 983 MobiDBLite consensus disorder prediction 464 478 - -
Tpr6g0840 983 SUPERFAMILY FYVE/PHD zinc finger 696 759 IPR011011 -
Tpr6g0840 983 Pfam PHD-finger 618 659 IPR019787 -
Tpr6g0840 983 SMART PHD_3 705 762 IPR001965 -
Tpr6g0840 983 SMART PHD_3 617 658 IPR001965 -
Tpr6g0840 983 MobiDBLite consensus disorder prediction 454 479 - -
Tpr6g0840 983 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 861 946 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0840 Tpr-Chr6 7225266 7235374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0840 268 980 PHD Transcription Factor Family AT2G36720 52.439 0.0 787
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr6g0840 TDBD 9.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0840 - - cam:101512705 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0840 6 7225266 7235374 Tpr1g4298 1 50061754 50069782 PCT