Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0827 ATGGATTGGAACATTGAGAGCACAAGACCCTTTGTTCCTCATGCAGAATCTTCCTTAAGCTTCTTCTACAACTATAACAACACCCCTTATTCAGGAATGGATGTGAGTCAAGCAGCAATGGGTGAGACACAACAAAGGTTGCTTCCAGCAATGGATGAAATGAACATCAATGGAAATAATTACAAAGAGAAGAAAAAGAGATTAACAAGTAATCAAATTGATTTACTTGAGAGAAGTTTCCAAGAGGAAATAAAGTTAGATCCTGAAAGGAAGATAAAGCTTTCAAGAGAGCTAGGGCTTCAACCTCGCCAAATCGCTGTTTGGTTCCAAAATAGGCGTACAAGGTGGAAAGCTAAGCACCTTGAACACTTGTATGATGTGCTTAAACAAGAATTTGATGTTGTCTCTAAGGAAAAGCAGAAACTTCAAGAAGAGGTTATGAAGTTGAAGGGAAAGCTAAAAGAACAAAGTAATTTTAGGACACAGCAAACATTTGTTGAAGAAACAGTAGAAAGCACATCAAAAGGACTAAGATGTTCTAACAAACCACAAGGAGGAACTGCAGAGAATTACACCAACAACAACAATGTCAATAGTACTTGTTTCACTGTTGAAGATTTTAATAACCCTGTTTCAATGCCTCCTCAACAATGTCACTGGCCTGTGTTACCTAATTATTATCCCTAA 687 0.3741 MDWNIESTRPFVPHAESSLSFFYNYNNTPYSGMDVSQAAMGETQQRLLPAMDEMNINGNNYKEKKKRLTSNQIDLLERSFQEEIKLDPERKIKLSRELGLQPRQIAVWFQNRRTRWKAKHLEHLYDVLKQEFDVVSKEKQKLQEEVMKLKGKLKEQSNFRTQQTFVEETVESTSKGLRCSNKPQGGTAENYTNNNNVNSTCFTVEDFNNPVSMPPQQCHWPVLPNYYP* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0827 228 Coils Coil 51 71 - -
Tpr6g0827 228 ProSitePatterns 'Homeobox' domain signature. 94 117 IPR017970 GO:0000981|GO:0006355
Tpr6g0827 228 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 1 222 - -
Tpr6g0827 228 SMART HOX_1 62 123 IPR001356 GO:0003677
Tpr6g0827 228 CDD homeodomain 62 120 IPR001356 GO:0003677
Tpr6g0827 228 SUPERFAMILY Homeodomain-like 51 119 IPR009057 -
Tpr6g0827 228 Coils Coil 125 159 - -
Tpr6g0827 228 Pfam Homeobox associated leucine zipper 119 153 IPR003106 GO:0006355|GO:0043565
Tpr6g0827 228 ProSiteProfiles 'Homeobox' domain profile. 59 119 IPR001356 GO:0003677
Tpr6g0827 228 Pfam Homeodomain 62 117 IPR001356 GO:0003677
Tpr6g0827 228 Gene3D - 56 124 - -
Tpr6g0827 228 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 222 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0827 Tpr-Chr6 7118906 7121335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0827 1 149 Homeobox Transcription Factor Family AT5G03790 53.939 8.63e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr6g0827 Homeodomain 2.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0827 - - gmx:100807872 251.136