Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0779 ATGGAGTTTTGGGGTACTGAGGTTAAAAGCGGAGAATCACTCAAGGTTGAGCCAGAAGATGACAAGATTATCCACCTTTCAGCGGCATGTCTGGGGGAGGTCAGCAAGGATAAAGGGGGTGAACCAGTATCCCTATATGTGAAGATTGATAACCAGAAGCTCCAACTTGGAACACTTTCTTCAGAAAAAATTCCTCAGATATCTTTTGATTTGGTATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAATATGGGAGCATCTTCTTTACTGGATTTAAAATGGAATCTCTGCTGGTTTCTGATGATGATGAAAATTCTGATGATAGTATTGAGGAAGATAATCCAGTTAATGCTGCTAATGGGAAACCTGAGGTTGAGGTTAAGAATGGTGCCAAACCTGGTGTAAATGAAGCTCAGCAAAATAAGACATCAGATCCAAAAAAGAAACAGAAGGATATTGAAAATGATGTTAGTGCTGACGATGAAGAAGATTCATCTGAAACTGACTCTGATGAGGATTCTAGTGAAGATGAGCCCGTGGCGAATGGTCAAATTGAAAGTAGTGATGATGAAGACGATAGCGAAGAGGATGATGAAGATTCTGATGATGAGGAGACACCAAAGAAGACTGAAGGGGGCACTAAGAGGGTTGCTGAATCTTCCAAGAAAACACCTGTGGCTGTGAAGAGAGCAAAATTTGCTACTCCAGAGAAGACTGGTAGCAAGAATGGTGTCCATGTTGATACTCCTTACCCTAAGCAAACTGTTAAATCAGGTGCAAATAACAAGCCGCCAATGAAGCAGCAGACTCCACAGTCAACTGGAGATTACAGCTGTAAACCTTGCAAAAGGTCATTTAAGACTGAAGATGCTTTGGGTTCTCATAATAGGGCCAAGCACAGTGCCAAGTGA 915 0.4153 MEFWGTEVKSGESLKVEPEDDKIIHLSAACLGEVSKDKGGEPVSLYVKIDNQKLQLGTLSSEKIPQISFDLVFEKEFELSHNWKYGSIFFTGFKMESLLVSDDDENSDDSIEEDNPVNAANGKPEVEVKNGAKPGVNEAQQNKTSDPKKKQKDIENDVSADDEEDSSETDSDEDSSEDEPVANGQIESSDDEDDSEEDDEDSDDEETPKKTEGGTKRVAESSKKTPVAVKRAKFATPEKTGSKNGVHVDTPYPKQTVKSGANNKPPMKQQTPQSTGDYSCKPCKRSFKTEDALGSHNRAKHSAK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0779 304 Pfam Nucleoplasmin-like domain 3 93 IPR041232 -
Tpr6g0779 304 MobiDBLite consensus disorder prediction 143 157 - -
Tpr6g0779 304 MobiDBLite consensus disorder prediction 158 206 - -
Tpr6g0779 304 PANTHER HISTONE DEACETYLASE HDT3-LIKE ISOFORM X1 1 300 - -
Tpr6g0779 304 Pfam C2H2-type zinc finger 278 302 - -
Tpr6g0779 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 304 IPR013087 -
Tpr6g0779 304 PANTHER 32 KDA HEAT SHOCK PROTEIN-RELATED 1 300 - -
Tpr6g0779 304 Gene3D Nucleoplasmin core domain 1 98 - -
Tpr6g0779 304 MobiDBLite consensus disorder prediction 104 282 - -
Tpr6g0779 304 MobiDBLite consensus disorder prediction 255 280 - -
Tpr6g0779 304 MobiDBLite consensus disorder prediction 207 227 - -
Tpr6g0779 304 ProSitePatterns Zinc finger C2H2 type domain signature. 280 301 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0779 Tpr-Chr6 6600489 6605210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0779 1 303 C2H2 Transcription Factor Family AT5G03740 40.584 5.48e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g0779 NPL 1.6e-10 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0779 - - gmx:100812152 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0779 6 6600489 6605210 Tpr6g0779 6 6600489 6605210 ECH