Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0777 ATGGATATGGAGAGCACGCGTAGATCGTTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCAAATCCAACTGCACGACCGTTTTCTCAACGACAAGGTGGTGGTTCTGGTGTTGCTTCGATGTTATCGGCCGGTAGGTTTCGAATGAACGATAGAGATTCTGATAGCAGTGACGGTGGTTATCACCCACAACCACCGCCGCATCAAGAGCTTGTGACTCAGTATAAGGCTGCTCTTGCTGAGCTTACTTTCAACTCGAAACCGATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAGGTACCAAGTGACCAAAAGCTGCCATCTCTTTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTACATAAAATACTTTGCTGCCAGGCTACCCGAGGTATACTGCAATACATACAGACAGGTTGAGCCTCCTGTCCATTCAAGTATGAGGCATCTTTTTGGAACTTGGAGAGGTGTCTTTCCTCCTCAGACCCTTCAGATAATTGAGAAGGAACTAGGCTTCACTCCAGCAGTCAATGGTTCAGCTTCTGCATCTGCCACCCTTAGAAGTGATTCTCAGTCTCAACGTCCAGCTCATAGCATTCATGTGAATCCCAAATATTTAGAAAGGCAGCGTCTTCAGCAGTCCAGCAGGACCAAGGGAGTATTTAATGATATGACTGGAGTTATTTCAAACTCAAATGAGGAACCAGAGAGGCCAGATAGAGCTTTGGGTGCTGCACGACCATGGCTGGATCCTAGGATTAACATGCATAATAATCAGCGTACTCATAGAGATGCATTTAATGATTCTGTTCCTGAAAAGAGCATTGGCGGTGCCTACGGAGACACTGAATATAATTCTAGTCTTTCAAATAATTTGGGCTCAGGTGTTGGAAGAACTGGAAGTAGGCTCATTGGCGGTGTTGCAGAGACGTTATCCGGGCAAAGAAGTGGTTTTGGCCTCAAACATGGTTTTTCAAATCACGAAGCACCGAAACCTATGAATTTGGATGCACATAACATTAGGAACAGTGTGATGTCAAGGAACTGGAAAAATTCAGAGGAAGAGGAGTTTGTGTGGGATGAGATGAACTCTGGTGTGCCTGATCATGTACCTAATGTCTCTAGCAACTTGAGCTCAGACCCATGGATGGCCGATGATGACAATTTGGAAACTGAAGATCACCTCCAAATCACACACCCAATTGGAAGAAAGGTTGATAAAGAAATATCTACCGTTAAGAAACAACTACCATCATCTGGGGGTCATCCATCATTATCATGGGAATTGCAGAAGCAGATCCCAAGTTCCAAACTGAATATGAAGTCAGGTCACTCAGAAATATCTGTTTCTGCTCCGAGTGGCTTACCTAAAAGTTCAAATTCTTTGGCTGTGAAGATAAAGAATCAGTCTTCTATGCTGCATACAATAGGAACAGCCAAAATTATGGGACAGCAGGAATTTGATTCTGAGGGGGCCGAATCCCCTTCTGAACAGTCACCTTCCCGACAACAGTCTCTATCAGTGCCAGTAACAACACATCACCCTCCTTCAAGTCAATATATTAGAGATCCCGCACCTGCCATTGGTCCCAATGTTCAGGTTGGTAACTTTCGAAAATCCCAAGAAAAGGACATGCGGGGTCTATTATTATCTTCGGCAACTTCTTATCAGCCAAAACCTCAGCAACGTCAGCTGGGCCCTTCACAGGCTGAAGTTACTCTTAAAGCTAAGCAGCCACTCAAGTCTAAAGTTTCTTTAGCCAAAGCCAAACCCACAGCCACTTTAGAAAAGTCAACCACAAAGAATCTTCCAGCTCCATCTGTGAAGAGTGGAATCATCCCGAACAAATTAATTACCAAAAGTCTGGATGCAAGTAATCGTCCATCTCAATCAGGGGTTAAGCCTACTCGGTCAGTTGGTCCTTCCCCTACCACATTTGTTTCTCCGGGTTCTTCAGCCGTGTCATTAGGTTCTCCAAATGATTATCCACAGGCTTCGCCAAAACTACCTCAAGGGAAGGCTGGAAAGAAGCAAAAGGATTCTAATCAATCCTCTGCTTCCTCTAATGAACGTGGCGCATCAGCTCCTAGCTCAAATGCCACCAATAAGAATACCTTAAATCCATTTTCAAATCTTTTAAGCTCTTTAGTTGCCAAAGGTTTGATATCTGCAGGAGCGGAGTCAGCAGCTGTATTGCCAAGTGAGATGGTGATGCGATCGAAAGACCAAACTGAAAACATTACTTCCAGTTCCTCTTCGCCAGTTGCTTCAGCTCCTGATTCTGCAGCCGTCCCGGTAAAATCTTCCAGAGATGAGGCAGATGCTGCTGCAAAAGCCTCACTTGCCTTGTCTCAATCAACTAGCACAGAAATTAGAAATCTCATTGGCTTTGATTTCAAACCTGATGTAATTCGAGAAATGCACCCACATGTAATCACAGAATTATTGGATGAACTCCCACATCATTGCAGTAATTGTGGTATTAGGCTTAAACAGCAAGAACAGTTTGATAGGCACTTGGAATGGCATGCTACAAAAGAAAGAGAACAAAATGGTCCGACTGGATCATCAAGAAGATGGTATGCAAAATCAGATGACTGGATTGCTGGCAAGGCCGAATATCTATCCGGGTCTGAATTTACTGATTCTGCCGATGAATATGATGATAAAATGGGAGACGGCAGTCAATTGGATTCTATGGTTGTAGCAGATGAAAACCAGTGCTTGTGTGTATTGTGTGGGGAGCTATTTGAAGATGTATACTGTCAGGAAAGCGACCAGTGGATGTTCAAGGGGGCTGTTTATCTGAACAATTCAGATAGCGATAGTGAGATGGAAAGTAGAAATTTGGGCCCCATCATTCATGCTAGATGCTTATCAGAGAACTCAATATCTGGTGTGGCCAATACAGAACATGATTAA 3015 0.4365 MDMESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRQGGGSGVASMLSAGRFRMNDRDSDSSDGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVYCNTYRQVEPPVHSSMRHLFGTWRGVFPPQTLQIIEKELGFTPAVNGSASASATLRSDSQSQRPAHSIHVNPKYLERQRLQQSSRTKGVFNDMTGVISNSNEEPERPDRALGAARPWLDPRINMHNNQRTHRDAFNDSVPEKSIGGAYGDTEYNSSLSNNLGSGVGRTGSRLIGGVAETLSGQRSGFGLKHGFSNHEAPKPMNLDAHNIRNSVMSRNWKNSEEEEFVWDEMNSGVPDHVPNVSSNLSSDPWMADDDNLETEDHLQITHPIGRKVDKEISTVKKQLPSSGGHPSLSWELQKQIPSSKLNMKSGHSEISVSAPSGLPKSSNSLAVKIKNQSSMLHTIGTAKIMGQQEFDSEGAESPSEQSPSRQQSLSVPVTTHHPPSSQYIRDPAPAIGPNVQVGNFRKSQEKDMRGLLLSSATSYQPKPQQRQLGPSQAEVTLKAKQPLKSKVSLAKAKPTATLEKSTTKNLPAPSVKSGIIPNKLITKSLDASNRPSQSGVKPTRSVGPSPTTFVSPGSSAVSLGSPNDYPQASPKLPQGKAGKKQKDSNQSSASSNERGASAPSSNATNKNTLNPFSNLLSSLVAKGLISAGAESAAVLPSEMVMRSKDQTENITSSSSSPVASAPDSAAVPVKSSRDEADAAAKASLALSQSTSTEIRNLIGFDFKPDVIREMHPHVITELLDELPHHCSNCGIRLKQQEQFDRHLEWHATKEREQNGPTGSSRRWYAKSDDWIAGKAEYLSGSEFTDSADEYDDKMGDGSQLDSMVVADENQCLCVLCGELFEDVYCQESDQWMFKGAVYLNNSDSDSEMESRNLGPIIHARCLSENSISGVANTEHD* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 771 789 - -
Tpr6g0777 1004 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 214 270 - -
Tpr6g0777 1004 ProSitePatterns Zinc finger C2H2 type domain signature. 854 874 IPR013087 -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 771 801 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 27 47 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 467 489 - -
Tpr6g0777 1004 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1001 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 518 557 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 1 50 - -
Tpr6g0777 1004 CDD CID_Pcf11 82 194 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 650 696 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 614 734 - -
Tpr6g0777 1004 Pfam CID domain 86 195 IPR006569 -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 707 734 - -
Tpr6g0777 1004 Gene3D - 74 202 IPR008942 -
Tpr6g0777 1004 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1001 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 238 263 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 214 229 - -
Tpr6g0777 1004 SUPERFAMILY ENTH/VHS domain 77 205 IPR008942 -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 520 549 - -
Tpr6g0777 1004 SMART 558neu5 80 202 IPR006569 -
Tpr6g0777 1004 MobiDBLite consensus disorder prediction 623 637 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0777 Tpr-Chr6 6564774 6571230 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0777 826 992 C2H2 Transcription Factor Family AT4G04885 38.150 1.64e-33 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0777 K14400 - gmx:100788958 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0777 6 6564774 6571230 Tpr6g0777 6 6564774 6571230 ECH