Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0772 ATGGAAATGGAAGACCATCATCATCATCATCATAATCATCACCACCATGAACAACAACATCAACAACAACAACAACAACAACACTATGTTAATGTTAGTGGTAACACTAACACTAATAGTATAACTGATTTCAGACAACTCATGAATATTGGACAAAGAACAACATCAACAACAACTGATCATCATTTTCCTACGGCGGAGTTATTCCCCGCCGCCGGCAACCCAAATATGACAGTGACACCACACTATGAGATGATGATGTTTGGCCGCCAAGTATCTGATATAATGCCTCGTTCATTTCATGACTTTGTTTCTACAGATTCTGCTGCTGCTGCTATTGCTACCACTGCTACAACTAGTGTTGTTTCAACTCCTACTCTTAGTGGTAATTTAGAAGCTGAAACAACTGTTTGTTTAGGTGGTGTTGATGCTTCTAATGGAAGATGGCCTAGACAAGAAACTCTTACTCTTCTTGAGATTAGATCTCGTCTTGATCCTCAATTCAAAGAAGCTACTCAAAAGGGTCCTCTTTGGGATCAACTTTCTAGGATAATGTGCGAGGAACATGGATATCAAAGGAGTGGGAAAAAATGCAGGGAGAAGTTTGAGAATCTATACAAATACTACAAAAAAACAAAAGAAGGAAAAGCAGGAAGACAAGATGGAAAACATTATAGATTTTTTCGTCAGCTTGAAGCCTTATATGGTCAAAACAATAACCCTTCTTCATCTTCACTCCCGGAAAACAATTTTTGTACCAACAATCAAGAAATGTTTCATTCTCAAAACAAACATTGTGATAGCCTCAGCCTCACAAACTCCACTGAATTTGACACATCATCGTCCGACAACGATGATCATAATGAAAGCTCCATGGAGAAGAGAAAAAAGAAGAGTAGTGGAAGAAGCTTCTGGAAGGTAAAGATAAAAGACTTCATTGATTCACAAATGAAGAAGTTGGTGGTGAAACAAGAGGAATGGTTGGAGAAACTCACAAAGACATTGGAACAAAAGGAAAAGGAAAGGGTTTTAAGAGAAGAAGAATGGAGGAAACAAGAGAAAGAAAGGTTGGAAAAAGAGCATAAATTTTGGGCTAAAGAAAGAGCATGGATTGAAGCAAGAGATGCTGCTTTAATGGAAGCTTTGCATAAACTAAAAGGAAATGATGAGATAATAAATACTCAATCTTCTTCTCATGATGGAAACAAGAAAAGAAAGGAAAACTCAAGAAGTTGTTTTTACTTTGATAATAACAACAATGTTGATAGGTCTTGTTTGTATAATAACAATGGAGGAGGTTCCTATTGTGGTGATGTTAATGATCAAAGAGAAGAACTTGGAAGAGTAGTAAGAAATGATGGTTCAAATTCTAGTAATGTTGTTGTTGCAGCTGAAAATTGTTTTCCATTGTTGATGAGTGAGGGAGGAAATTTGTGGGAGAATTACAGCTTAAAGGTTAGTAAAGCAAACCAAAATCAGTGA 1482 0.3671 MEMEDHHHHHHNHHHHEQQHQQQQQQQHYVNVSGNTNTNSITDFRQLMNIGQRTTSTTTDHHFPTAELFPAAGNPNMTVTPHYEMMMFGRQVSDIMPRSFHDFVSTDSAAAAIATTATTSVVSTPTLSGNLEAETTVCLGGVDASNGRWPRQETLTLLEIRSRLDPQFKEATQKGPLWDQLSRIMCEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRQDGKHYRFFRQLEALYGQNNNPSSSSLPENNFCTNNQEMFHSQNKHCDSLSLTNSTEFDTSSSDNDDHNESSMEKRKKKSSGRSFWKVKIKDFIDSQMKKLVVKQEEWLEKLTKTLEQKEKERVLREEEWRKQEKERLEKEHKFWAKERAWIEARDAALMEALHKLKGNDEIINTQSSSHDGNKKRKENSRSCFYFDNNNNVDRSCLYNNNGGGSYCGDVNDQREELGRVVRNDGSNSSNVVVAAENCFPLLMSEGGNLWENYSLKVSKANQNQ* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0772 493 Pfam Myb/SANT-like DNA-binding domain 148 234 IPR044822 -
Tpr6g0772 493 MobiDBLite consensus disorder prediction 275 297 - -
Tpr6g0772 493 CDD GT1 148 213 - -
Tpr6g0772 493 ProSiteProfiles Myb-like domain profile. 141 206 IPR001005 -
Tpr6g0772 493 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 60 396 - -
Tpr6g0772 493 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 390 484 - -
Tpr6g0772 493 Coils Coil 321 348 - -
Tpr6g0772 493 MobiDBLite consensus disorder prediction 280 297 - -
Tpr6g0772 493 MobiDBLite consensus disorder prediction 1 28 - -
Tpr6g0772 493 Gene3D - 149 211 - -
Tpr6g0772 493 PANTHER - 390 484 - -
Tpr6g0772 493 PANTHER - 60 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0772 Tpr-Chr6 6513376 6516439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0772 402 488 Trihelix Transcription Factor Family AT5G03680 36.735 1.84e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tpr6g0772 Myb_DNA-bind_4 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0772 - - cam:101499561 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0772 6 6513376 6516439 Tpr6g0772 6 6513376 6516439 ECH
Tpr6g0772 6 6513376 6516439 Tpr1g4208 1 48856205 48860650 PCT