Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0748 ATGGCTAATTCAGGAATGTATGTCAAGATGACTAAGATATCTGAAATTACTAGTGGCAAAATTGACTTTCAATTGAGAGTACGTGTAATCAATTTATGGTCCACTCCAGATCGTGCTAATCTTGCTGAGGATGGAGCTCTCCACATGATTTTTCTTGACAAGGATTGTGGAAAGATATATGCAACGGTTAGGAAAGATTTACTCCCTCAGTTCAAAGATGATATTGAGGAGGGTGCTGCTTATGTTATGGAGAGATTCATGGTTGGTAAGAATGACTCTTCTTTTAAGAGCACCCCTCATAAGCACAAGCTTAATTTCATGCGTGGTACTAAGCTAATTAAAGTGAAAGCTGCTGAAATACCATCAAACCATTTCAATTTTATGCCTTTCCATGAAATTCTCACCTCTACTAAAGAGGACCAGCTGCTTGATGTCATTGGTCATGTTGTTGAGAAGAATGCTATGAAAGAAACTGAGAAAAATGGCAAGATAAGTAAGGTCATGGATGCTACTCTCGAAGATTTGGAAGGGAATAGAATCCATTGTACCTTGTGCGATGATTATGCTGAAAAGATGCAGCGATTCCTTGATAGCAATGATCCATCACTTCCTGTGATACTTATTTTCCAACTGTGTTCAATGGGGGTTTCCAACTCTTTTTATGGATCAAAATTGTTCTTGAATGTTGATATGCCTGAGGTTGCTAGCTACATAGAAAGGATGAATGCTGCAAATGTAGAGTTAACTCAAGTTGTGAGTCAAATGTCTGGACCACCTGTAGTTAGTGTTGCAGATGATTTGTTGCAAACACCTAGAATGACAATAGAGGATCTCATTGAATCCACTGAGAAATGTAGTGGCTCTGTTTTGGCTTGGGCTTGTGAGTTTGATATGGATGCTGGTTGGTTTTATCAAGCCTGTACTAGGTGTGCTTCTAGGATCAATTTTGTGGCAGGACAACTATATTGTGACAAGTGCAAAATGCCAAGAACTGCCATCCCAAGGTACAAGATCAACCTTCAAGTGATTGATAACACAGGATCAATTACTTTTGTTATGTTCGATCGTGTGGTTTTCCAGGTTGTCGGACTAACAGCCCAGGATTTGCTAGATTCCATGAATAATGATCCTAACTCAGCTTCTTATCCACAAGCACTTGATGTGTTTATCAACAAACAAATGCTCTTCAAAGTTGAAGTGTCCGGTGCCAATTTGTATCGTAATTGGCGTGGTTACACTGTGAAGAAAGTGACTTCTGATGAGGATATTATAAAGAGTTTCGCTTCTCTACATGGAATAGATTTGGATGTTAATGCTGACAACACCAATTTCGACCAGTTTGGGTGTGATTTAGGAACCGATAATCCTCCGGTTCTACTTGATGGAGTTGAATCAAGCAATAATGTGCATGACAAAGTCTCTAGCTCTGTCCACACTCCAACTAGCAAGTTGGCTGTCAAAGATGTACCTGCCATTGATAGAGGTGGCGCATCCTCCTCTAAGAAACCAGCTGCTCAGAGGGTTATTGACCTTGGTGAAGACAATGTGGCTCCTACTGCTGTAGATGATCCATCCACAGGCAGTGTAGATGGAAAAAAAACTGCTGATCTAGGAGAAGCCCAGCTTGCCACTGCAAAGGAAGTCAATCTGCTACCTGTGAAAATTGAGGGTCCTTAG 1677 0.4061 MANSGMYVKMTKISEITSGKIDFQLRVRVINLWSTPDRANLAEDGALHMIFLDKDCGKIYATVRKDLLPQFKDDIEEGAAYVMERFMVGKNDSSFKSTPHKHKLNFMRGTKLIKVKAAEIPSNHFNFMPFHEILTSTKEDQLLDVIGHVVEKNAMKETEKNGKISKVMDATLEDLEGNRIHCTLCDDYAEKMQRFLDSNDPSLPVILIFQLCSMGVSNSFYGSKLFLNVDMPEVASYIERMNAANVELTQVVSQMSGPPVVSVADDLLQTPRMTIEDLIESTEKCSGSVLAWACEFDMDAGWFYQACTRCASRINFVAGQLYCDKCKMPRTAIPRYKINLQVIDNTGSITFVMFDRVVFQVVGLTAQDLLDSMNNDPNSASYPQALDVFINKQMLFKVEVSGANLYRNWRGYTVKKVTSDEDIIKSFASLHGIDLDVNADNTNFDQFGCDLGTDNPPVLLDGVESSNNVHDKVSSSVHTPTSKLAVKDVPAIDRGGASSSKKPAAQRVIDLGEDNVAPTAVDDPSTGSVDGKKTADLGEAQLATAKEVNLLPVKIEGP* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0748 558 Pfam Domain of unknown function DUF223 49 139 IPR003871 -
Tpr6g0748 558 SUPERFAMILY Nucleic acid-binding proteins 9 114 IPR012340 -
Tpr6g0748 558 Gene3D - 265 427 IPR012340 -
Tpr6g0748 558 PANTHER BNAC07G49340D PROTEIN 57 503 - -
Tpr6g0748 558 MobiDBLite consensus disorder prediction 492 534 - -
Tpr6g0748 558 SUPERFAMILY Nucleic acid-binding proteins 270 418 IPR012340 -
Tpr6g0748 558 Gene3D - 118 251 IPR012340 -
Tpr6g0748 558 Pfam Replication factor-A C terminal domain 301 402 IPR013955 -
Tpr6g0748 558 PANTHER REPLICATION FACTOR A 1, RFA1 57 503 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr6g0748 558 CDD RPA1_DBD_A_like 25 111 - -
Tpr6g0748 558 Gene3D - 8 114 IPR012340 -
Tpr6g0748 558 CDD RPA1_DBD_B_like 144 241 - -
Tpr6g0748 558 SUPERFAMILY Nucleic acid-binding proteins 124 243 IPR012340 -
Tpr6g0748 558 CDD RPA1_DBD_C 288 420 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0748 Tpr-Chr6 6212640 6215300 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0748 23 401 Core DNA Replication Machinery Family AT5G08020 24.181 4.39e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0748 - - mtr:MTR_1g105785 465.692