Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0739 ATGGAAACGTCATTAGAGTTGAAAGAAGTTCAGAAACTCGAAGGTCACACCGATAGGGTTTGGAGCTTGGATTGGAACCCTGCCACCGGCCACGATGGTATTCCACTCGTCTTCGCTTCTTGCAGCGGCGACAAAACTGTTCGAATCTGGGAACAAAATCTCTCCACTAATCTCTTCTCTTGCAAGGCGACTTTGGAAGAAACGCACACTCGAACTGTTCGGTCTTGTGCTTGGTCACCAACCGGGAAATTGTTGGCAACTGCAAGTTTTGATGCCACCACTGCCATATGGGAAAATGTTGGGGGTGATTTTGAGTGTGTCTCTACTTTGGAGGGACATGAAAATGAAGTAAAGAGTGTATCTTGGAATGCAGCTGGAACTTTGCTTGCAACTTGCAGTAGGGACAAGTCTGTTTGGATATGGGAAGTGCAGCCAGGTAATGAGTTTGAGTGTGTGTCAGTGCTGCAAGGACATACTCAGGATGTGAAAATGGTGAGGTGGCACCCAACGGAGGATATCTTATTTTCATGTAGCTATGATAATAATATTAAGGTTTGGGCAGATGAAGGTGACAGTGATGACTGGCAGTGTGTTCAAACCCTTGGAGAACCCAATAACGGTCATACTTCTACTGTTTGGGCCCTCTCCTTCAATCCTAGTGGAGACAAAATGGTTACCTGTAGTGATGATCTTACCCTAAAGGTATGGGGAACAGAGAGCATAGGTATGCAATCTGGTGGTGGATTTGCTCCTTGGAGACATCTTTGCACTCTTACGGGGTATCATGAGCGGACAATTTTCTCAGTTCATTGGTCAAGGGGAGGTATCTTTGCCAGTGGAGCTGCTGATGACGCTATTCGGCTTTTTGTGGATGATAACAGTGAAAGTCAGGTTGATGGTCCTTTGTACAAGTTGCTACTGAAGAAGGATAAAGCTCATGACATGGATATAAATTATGTGCAGTGGAGCCCTGGGGAGAAGCCACTGCTAGCCTCTGCAAGCGATGATGACAATCAAGGTGTGGGATCTGGTATCATAGTGGTGATACTAGTTTAG 1056 0.4583 METSLELKEVQKLEGHTDRVWSLDWNPATGHDGIPLVFASCSGDKTVRIWEQNLSTNLFSCKATLEETHTRTVRSCAWSPTGKLLATASFDATTAIWENVGGDFECVSTLEGHENEVKSVSWNAAGTLLATCSRDKSVWIWEVQPGNEFECVSVLQGHTQDVKMVRWHPTEDILFSCSYDNNIKVWADEGDSDDWQCVQTLGEPNNGHTSTVWALSFNPSGDKMVTCSDDLTLKVWGTESIGMQSGGGFAPWRHLCTLTGYHERTIFSVHWSRGGIFASGAADDAIRLFVDDNSESQVDGPLYKLLLKKDKAHDMDINYVQWSPGEKPLLASASDDDNQGVGSGIIVVILV* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0739 351 ProSitePatterns Trp-Asp (WD) repeats signature. 129 143 IPR019775 -
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 155 186 - -
Tpr6g0739 351 Hamap Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1]. 5 346 IPR028608 GO:0016226|GO:0097361
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 13 51 - -
Tpr6g0739 351 PANTHER CYTOSOLIC IRON-SULFUR PROTEIN ASSEMBLY PROTEIN CIAO1 HOMOLOG-RELATED 3 337 - -
Tpr6g0739 351 PANTHER WD40 PROTEIN CIAO1 3 337 IPR028608 GO:0016226|GO:0097361
Tpr6g0739 351 CDD WD40 9 336 - -
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 110 151 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 13 51 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 186 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 205 236 IPR001680 GO:0005515
Tpr6g0739 351 Pfam WD domain, G-beta repeat 105 141 IPR001680 GO:0005515
Tpr6g0739 351 Pfam WD domain, G-beta repeat 195 236 IPR001680 GO:0005515
Tpr6g0739 351 Pfam WD domain, G-beta repeat 150 186 IPR001680 GO:0005515
Tpr6g0739 351 Pfam WD domain, G-beta repeat 9 50 IPR001680 GO:0005515
Tpr6g0739 351 Pfam WD domain, G-beta repeat 61 97 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 205 236 - -
Tpr6g0739 351 Gene3D - 35 341 IPR015943 GO:0005515
Tpr6g0739 351 SUPERFAMILY WD40 repeat-like 6 337 IPR036322 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats profile. 66 98 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 110 144 - -
Tpr6g0739 351 SMART WD40_4 194 237 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 303 349 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 6 51 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 251 290 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 103 142 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 148 187 IPR001680 GO:0005515
Tpr6g0739 351 SMART WD40_4 58 98 IPR001680 GO:0005515
Tpr6g0739 351 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 66 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0739 84 288 U-box Gene Family AT2G33340 27.184 1.65e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0739 K24730 - gmx:100778826 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0739 6 6126537 6132647 Tpr6g0739 6 6126537 6132647 ECH