Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0725 ATGCATAAAATGCCCGGGACAAGACAGAAAGATGCAACAGCCCAAAATTCAGAGTCACCAGGGGGAAACAGTGAACCTGAAAAACCGACAAATTCTGGTGAGCAGGTCGATCTTAATGTGGATAATGATCAAGAGGAGACCTCAGAAGAAGAGGTTGAGTATGAAGAGATAGAGGTGGAGGAAGAAGTGGAAGAGGAAGAAGAGGAGGAAGAGGAGGAAGACGAAGCAGAGGAAGAGAATAAGCCCTCAGATGGTGAAGATGCGATGAGAGTCGAAGATGAGGTTGAGAAAAAGAAACATGCTGAGCTTCTTGCACTTCCACCTCATGGTTCAGAGGTCTACATTGGGGGAATTCCTCGTGAAGTTTCTGAAAAAGATTTAAAGGTGTTTTGTCAATCTGTGGGAGAAGTGGCACAGGTCAGGATTATGAAAGGGAAAGAATCAAATGGTTATGCTTTTGTGACCTTCAAGACAAAGGAATTGGCATCTAAGGCTATGGAGGAGCTGAACAATTCTGAATTTAAGGGGAAAAGAATAAAGTGCTCACCATCTCAAGTTAAACATAGGTTATTCATTGGTAATGTTCCTAAAGATTGGACCGTAGAAGATATGAAGAAGGTTGTTGCTAAAGTTGGCCCCGGAGTAATTTCTGTGGAACTATTGAAGGATCCACAGGGTTCTAGCCGTAATCGGGGATTTGCTTTTATTGAGTATCACAATCATGCTTGTGCAGAATATTCAAGGCAGAAAATGTCAAACTCACAATTTAAACTTGACAATAATGCTCCAACAGTGAGCTGGGCTGACCCAAGGAATTCTGAATCATCAGCATCCTCTCAGGTGAAAGCAGTATATGTAAAGAACCTTCCAGAAGACATAACTCAGAATCGTCTGAGGGAGCTGTTTGAACATCATGGAAAGATCACAAAAGTGGCTCTCCCTCCTGCTAAAGCCGGACAAGAAAAGAGTAGATATGGTTTTGTGCACTTTGCTGATAGGTCAAGTGCAATGAAGGCATTGAAGAATACGGAGAAGTATGAAATTGATGGCCAAACATTGGAATGCTCACTCGCTAAGCCACAGGCAGACCAGAAGTCATCTGGTACTTCAAATTCGCACCAGTCATCTGTACTTCCTTATCCATCTCCTCTTGGATATGGTGCTCTTGGTGCAGGATATGGTGCACTTGGTGCAGGATATGGTGCTGCTGGCTTTGCGCCGCCACTAATGTATGGTCCGGGAGCAACTCCTGCCGGCATGGCAATGATGCCAATGCTTTTACCAGATGGAAGAATTGCATATGTTTTGCAACAACCAGGTTTGCAGCAGCCAGGATTGCAGCAGCCGGGTTTGCAGCAGTCGGGTTTTCAACAGCATGCTCCATCCCCAGTATCCAGACATGGTAGGAATAGTGGTGGTAGCTCAAGTGGTGAAAAGCGTAGTAACGATAATAACCGTAACCGTGGTCATGGCCGATATAATCCCTACTAA 1491 0.4447 MHKMPGTRQKDATAQNSESPGGNSEPEKPTNSGEQVDLNVDNDQEETSEEEVEYEEIEVEEEVEEEEEEEEEEDEAEEENKPSDGEDAMRVEDEVEKKKHAELLALPPHGSEVYIGGIPREVSEKDLKVFCQSVGEVAQVRIMKGKESNGYAFVTFKTKELASKAMEELNNSEFKGKRIKCSPSQVKHRLFIGNVPKDWTVEDMKKVVAKVGPGVISVELLKDPQGSSRNRGFAFIEYHNHACAEYSRQKMSNSQFKLDNNAPTVSWADPRNSESSASSQVKAVYVKNLPEDITQNRLRELFEHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNSHQSSVLPYPSPLGYGALGAGYGALGAGYGAAGFAPPLMYGPGATPAGMAMMPMLLPDGRIAYVLQQPGLQQPGLQQPGLQQSGFQQHAPSPVSRHGRNSGGSSSGEKRSNDNNRNRGHGRYNPY* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0725 496 MobiDBLite consensus disorder prediction 9 38 - -
Tpr6g0725 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 186 IPR000504 GO:0003723
Tpr6g0725 496 CDD RRM_SF 113 182 - -
Tpr6g0725 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 180 IPR000504 GO:0003723
Tpr6g0725 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 257 IPR000504 GO:0003723
Tpr6g0725 496 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Tpr6g0725 496 MobiDBLite consensus disorder prediction 445 480 - -
Tpr6g0725 496 SMART rrm2_1 112 182 IPR003954 GO:0003676
Tpr6g0725 496 PANTHER GEO13361P1-RELATED 16 494 - -
Tpr6g0725 496 MobiDBLite consensus disorder prediction 39 82 - -
Tpr6g0725 496 Gene3D - 189 269 IPR012677 -
Tpr6g0725 496 SUPERFAMILY RNA-binding domain, RBD 278 385 IPR035979 GO:0003676
Tpr6g0725 496 SUPERFAMILY RNA-binding domain, RBD 108 272 IPR035979 GO:0003676
Tpr6g0725 496 PANTHER - 16 494 - -
Tpr6g0725 496 Gene3D - 271 395 IPR012677 -
Tpr6g0725 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Tpr6g0725 496 MobiDBLite consensus disorder prediction 445 496 - -
Tpr6g0725 496 Gene3D - 32 188 IPR012677 -
Tpr6g0725 496 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 270 IPR000504 GO:0003723
Tpr6g0725 496 SMART rrm1_1 112 182 IPR000504 GO:0003723
Tpr6g0725 496 SMART rrm1_1 283 356 IPR000504 GO:0003723
Tpr6g0725 496 SMART rrm1_1 189 266 IPR000504 GO:0003723
Tpr6g0725 496 Coils Coil 40 81 - -
Tpr6g0725 496 MobiDBLite consensus disorder prediction 1 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0725 Tpr-Chr6 6013768 6019674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0725 113 427 Eukaryotic Initiation Factors Gene Family AT1G71770 24.185 7.54e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0725 K13161 - gmx:100798476 612.068