Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0724 ATGGATACATTAAGCCCTGCAGTCTTTGTCAATGCAGAACTGTTACCCTTTTATGTTGGAAGAAGAGTTCGTACTGTCATGCAGGTTTTGCATTCTGACGGTGTAGCTGTCATTGGAAAATCACCAGATGAGAAGCAGTTGATTGTAAAAGGACCACCCCCACCCGCTCCTCTTACAAGTTTTGTAGAAGTTGTTGGCATTGTTAACAGTGACAAGTCCATCAAAGCCGAGTTATGGACCAACTTTGGTGATGCAATTGATATGTTCAGCTACAATAAGGTTTGTCAGCTCGCAAATGGAGATTTTAAACACTTGTTCCTGTGA 324 0.4198 MDTLSPAVFVNAELLPFYVGRRVRTVMQVLHSDGVAVIGKSPDEKQLIVKGPPPPAPLTSFVEVVGIVNSDKSIKAELWTNFGDAIDMFSYNKVCQLANGDFKHLFL* 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0724 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Tpr6g0724 107 CDD RPA3 6 106 - -
Tpr6g0724 107 SUPERFAMILY Nucleic acid-binding proteins 6 106 IPR012340 -
Tpr6g0724 107 Gene3D - 2 107 IPR012340 -
Tpr6g0724 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Tpr6g0724 107 Pfam Replication factor A protein 3 6 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0724 Tpr-Chr6 6010108 6011995 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0724 1 107 Core DNA Replication Machinery Family AT4G18590 57.009 2.47e-45 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0724 K10740 - gmx:100306641 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0724 6 6010108 6011995 Tpr6g0724 6 6010108 6011995 ECH
Tpr6g0724 6 6010108 6011995 Tpr1g2007 1 20548534 20561696 PCT