Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0706 ATGGCCTCCATCACAAGAATAGTCGGTCACAATAATTCCGTATCTCCCTTTCTTCTCACTTTCCGCAGAGCTATTGCTTTCAAGCTTTTCGTTGGAGGACTCTCCTTTCACACTACAGATAAATCATTGTCAGATGCATTCTCAAATTATGGACAAGTTGTTGAAGCTAAAGTTATAACGGATAGGGTGTCAGCGAAATCTAAAGGGTATGGTTTTGTTACTTTTGCTTCACAAGATGAAGCTGAGTGTGCCATAACAGAGATGAATGAAAAGGCATTAAACGGACGTGTTATCTTCGTTGATTATGCAAAACCAAATACTAAACGCAGTATGGGAATGCCAATTGCCAGAGGACCTCCAGAAGATCTGAACAAACAACAGTCAGTAGATTCTGCCGGAGCACCTCCTGAAGATCTGAACAAACAACAGACAGTAGATTCTCCTAAAGACGCATGA 456 0.4123 MASITRIVGHNNSVSPFLLTFRRAIAFKLFVGGLSFHTTDKSLSDAFSNYGQVVEAKVITDRVSAKSKGYGFVTFASQDEAECAITEMNEKALNGRVIFVDYAKPNTKRSMGMPIARGPPEDLNKQQSVDSAGAPPEDLNKQQTVDSPKDA* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0706 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 98 IPR000504 GO:0003723
Tpr6g0706 151 PANTHER TRANSFORMER-2-RELATED 16 122 - -
Tpr6g0706 151 Gene3D - 20 118 IPR012677 -
Tpr6g0706 151 MobiDBLite consensus disorder prediction 124 142 - -
Tpr6g0706 151 MobiDBLite consensus disorder prediction 109 151 - -
Tpr6g0706 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Tpr6g0706 151 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE 16 122 - -
Tpr6g0706 151 SUPERFAMILY RNA-binding domain, RBD 27 119 IPR035979 GO:0003676
Tpr6g0706 151 SMART rrm1_1 28 101 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0706 Tpr-Chr6 5846959 5848887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0706 29 119 Eukaryotic Initiation Factors Gene Family AT1G49760 33.981 3.65e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0706 - - lja:Lj1g3v4721740.1 200.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0706 6 5846959 5848887 Tpr6g0706 6 5846959 5848887 ECH