Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0702 ATGTCATTACCAGAAACGGCGTCGTTATGGTGGAACAGTAGTCAACAACAACAACAGAAAACGCAACAAGAAGAAGAAGGTGAAATAGAAGACGACGTCGTTTCAGACACACTAACAAAAATGAAATCAACACCAGAAGAAGAAGAAAAAGAATCCATGTTTGAGAAACCATTAACACCAAGCGACGTAGGAAAACTGAACCGACTCGTTATACCAAAACAACATGCTGAAAGATATTTCCCACTCGACTCAGAAGAAGTAAAAGGTTTATTACTGAGTTTTGAAGACGAGTCAGGTAAGTGTTGGAGATTTCGTTATTCATATTGGAATAGTAGTCAGAGTTATGTTCTAACTAAAGGTTGGAGTCGTTATGTTAAAGATAAACGTCTTGATGCTGGTGATGTTGTTTTGTTTCAACGACACCGTACTCAGCCGTCACGGTTTTTTATTTCTTGGAGGCGCCGCCATGGTAGTAATTCTACACCACCGGCTTATGTTAGTAATAGTATTGATGGTAATGGGGTTGTTTCTGTTGGGTGGGCCAGAGGACTTTATCCTGCGCCGAATGCTTATCCTACGCATCATCATCATCCCTTGTCTAATTACCATGCAGGTGGAGGGACCGAAAGTCAGAATACAAGCACAGGTTGTGGAAACAATTCAAGTTCGAGTACATCCAGGGTGCTAAGGCTATTTGGAGTGAACATGGAATGCCAACCTGATAATGATAATAATATTAATGATGATTCCCAAACTAATTTCACACCAGATAATAATCAATGCTCTTATAATAATAATAATAATAATAACAATAATATCTCATCAACAACAACAACAACACAAGGCACAGCTATTCCACAATTCTACCACCACCTCCACCGTCAACCTCCTTCAAACCCTCACCATCACATGCTACGTCAACAACCATATTAA 933 0.3955 MSLPETASLWWNSSQQQQQKTQQEEEGEIEDDVVSDTLTKMKSTPEEEEKESMFEKPLTPSDVGKLNRLVIPKQHAERYFPLDSEEVKGLLLSFEDESGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFQRHRTQPSRFFISWRRRHGSNSTPPAYVSNSIDGNGVVSVGWARGLYPAPNAYPTHHHHPLSNYHAGGGTESQNTSTGCGNNSSSSTSRVLRLFGVNMECQPDNDNNINDDSQTNFTPDNNQCSYNNNNNNNNNISSTTTTTQGTAIPQFYHHLHRQPPSNPHHHMLRQQPY* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0702 310 MobiDBLite consensus disorder prediction 1 56 - -
Tpr6g0702 310 MobiDBLite consensus disorder prediction 33 56 - -
Tpr6g0702 310 SMART B3_2 54 156 IPR003340 GO:0003677
Tpr6g0702 310 ProSiteProfiles B3 DNA-binding domain profile. 54 156 IPR003340 GO:0003677
Tpr6g0702 310 Gene3D - 42 164 IPR015300 -
Tpr6g0702 310 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 17 252 - -
Tpr6g0702 310 MobiDBLite consensus disorder prediction 1 22 - -
Tpr6g0702 310 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 252 IPR044800 GO:0003700
Tpr6g0702 310 Pfam B3 DNA binding domain 54 155 IPR003340 GO:0003677
Tpr6g0702 310 CDD B3_DNA 53 154 IPR003340 GO:0003677
Tpr6g0702 310 SUPERFAMILY DNA-binding pseudobarrel domain 50 156 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0702 Tpr-Chr6 5810996 5813801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0702 47 250 RAV Transcription Factor Family AT5G06250 53.023 2.00e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr6g0702 B3 2.3e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0702 - - cam:101494766 350.132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0702 6 5810996 5813801 Tpr6g0702 6 5810996 5813801 ECH
Tpr6g0702 6 5810996 5813801 Tpr1g4370 1 50902246 50905291 PCT