Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0663 ATGGATCATGACGAGATCGAGATCGATGTTCCTTCATTCTTTGTTTGTCCTATATCATTAGAAATCATGAAGGATCCGGTAACCGTTTCAACCGGTATAACTTACGACAGAGAAAGTATCGAAAAATGGTTGATTTCAAAGAAAAACAAAACATGTCCTGTTACAAAACAAGAGTTATCAGATTACACTGATCTTACACCAAATCATACACTTAGAAGATTGATCCAAGCATGGTGCACATTAAATGCTTCACAAGGAGTTGAAAGAATTCCAACACCAAAACCACCAACCAACAAAACCCAAATCACAAAACTAATCAAAGAAGCTTCTCATTCATCTCTCACCATTCAGATTAATTGTCTTAAAAGACTTAAATCCATTGCTTCTGGAAGTGAAACAAATAAACGTATCATGGAAGATGCAGGTGTTGTTGAGTTTTTAGCTTCTGTTGTAATAAACAATGATCCTGCATCATTATTGTCTGAGATTAATGTTAATCCTGTTGATGAAGCATTAAGTATACTTCATAATCTTCATGTTTCCGAGACTGGATTGAAGAATCTTCTGGCTTTTAGAAACGGCGAATTTATTGAGTCATTAACAAAAGTTATGCAGAAAGGTTTCTTTGAATCAAGAGCTTATGCAGTTTTTTTGTTAAAATCTATGTCACAAGTAGCAGAAGCAGTGCAGTTACTACATCAAAAAACCGAACTGTTTGTTGAACTGGTTCAAGTTTTGAAGGATCAAATATCTCAAAAGGTATCAAAAGCAGCACTTCAGACATTGATTGAACTTTGTCCATGGGGAAGAAACAGAATCAGAGGTGTTGAAGCAGGAACAGTTCCTGTTTTGATAGAACTTTTATTAGAAAATTTCAAAGACAGAAAACCAAATGAAATGATGTTGGTTTTGTTGGAGAATCTTTGTCAATGTGCTGAAGGAAGAGCTGAACTTTTGAAACATGCAGCTGGTCTAGCTGTTGTTTCTAAGAAGATTCTAAGGGTTTCGACGCTCGCGAATGATAGAGCTGTGAGGATTCTGTTGTCTGTTTCTAAATTCTCTGCAACTCCTAATGTTGTTCAAGAAATGCTTAAACTTGGTGTTGTTGCTAAACTTTGTTTGGTTCTTCAAGTTGATTGTGGAAGTAAGACAAAAGAGAAAGCTAGGGAGATACTTAAGATGCATGCTAGGGCTTGGAGGAATTCTCCATGCATACCTAGTAATTTACTTTCTTCATACCCCAATTATGTATGA 1254 0.3581 MDHDEIEIDVPSFFVCPISLEIMKDPVTVSTGITYDRESIEKWLISKKNKTCPVTKQELSDYTDLTPNHTLRRLIQAWCTLNASQGVERIPTPKPPTNKTQITKLIKEASHSSLTIQINCLKRLKSIASGSETNKRIMEDAGVVEFLASVVINNDPASLLSEINVNPVDEALSILHNLHVSETGLKNLLAFRNGEFIESLTKVMQKGFFESRAYAVFLLKSMSQVAEAVQLLHQKTELFVELVQVLKDQISQKVSKAALQTLIELCPWGRNRIRGVEAGTVPVLIELLLENFKDRKPNEMMLVLLENLCQCAEGRAELLKHAAGLAVVSKKILRVSTLANDRAVRILLSVSKFSATPNVVQEMLKLGVVAKLCLVLQVDCGSKTKEKAREILKMHARAWRNSPCIPSNLLSSYPNYV* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0663 417 ProSiteProfiles U-box domain profile. 9 85 IPR003613 GO:0004842|GO:0016567
Tpr6g0663 417 SUPERFAMILY RING/U-box 4 83 - -
Tpr6g0663 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 89 IPR013083 -
Tpr6g0663 417 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 7 414 - -
Tpr6g0663 417 Pfam U-box domain 10 80 IPR003613 GO:0004842|GO:0016567
Tpr6g0663 417 SUPERFAMILY ARM repeat 102 393 IPR016024 -
Tpr6g0663 417 SMART Ubox_2 13 78 IPR003613 GO:0004842|GO:0016567
Tpr6g0663 417 Gene3D - 94 404 IPR011989 -
Tpr6g0663 417 PANTHER WDSAM1 PROTEIN 7 414 IPR045185 GO:0061630
Tpr6g0663 417 CDD RING-Ubox_PUB 14 57 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0663 Tpr-Chr6 5420671 5422172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0663 7 414 U-box Gene Family AT3G52450 57.506 8.46e-174 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0663 - - gmx:100809123 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0663 6 5420671 5422172 Tpr6g0663 6 5420671 5422172 ECH
Tpr6g0663 6 5420671 5422172 Tpr1g4399 1 51590238 51591828 PCT
Tpr1g4402 1 51607926 51609667 Tpr6g0663 6 5420671 5422172 PCT