Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0659 ATGGCGGCTACTATAGCTTCTGCTTCATCTTCTATCTTCAATAGAATCTACAATCTCTCATTTATTCACTCTTCCATTTCACTCACCACCACAAACTTCCATCAAAGACCCATTTCCCATAAACACTTCAATCTCATCCTCAACTCTCAAAGTTTCAATCTTTCTCCTCTCCCACTTCAATCTCTTCATCCCCCATTCGCTGCCGAAGTTGAATTCCAAACTTCTCAAGATACCACAATTTCACAACAAGAAGAACCAGAAACAGAACAAGAAACCTCTGATAAACCACAACAAGAGGAAGAAGAACAGAAAGTATCAACCTCAGATGATGCTGGAAGACTCTATGTTGGAAATTTGCCATTTACAATTACTTCTTCACAATTGACTGAAATCTTTGCAGAAGCTGGCACTGTCGTGTCTGTTGAGATTGTGTATGATCGAGTTACAAACAGGAGCAGAGGATTTGCATTTGTTACAATGAAAAGTGTTGAAGAAGCTAAAGTAGCAATTCAAATGTTTGATGGCTCTCAAGTTGGTGGTAGGAGTGCTAAGGTAAATTTTCCAGAAGTGCCAAAAGGAGGTGAAAGGTTGGTATTGGTACAAAAAAATAGAGACAACTACAAAGGCTTTGTAGACAGCCCTCACAAGATCTATGCTGGAAACCTTGGCTGGGGACTGAACTCTCAGGATCTTAGAGATGCCTTTGCTGAACAGCCAGGCATATTGGGTGCCAAAGTCATCTATGAGAAGGATAATGGAAGATCTCGAGGTTTCGGATTTGTCACTTTTGAAACTGCTGAGAATTTAAAAGCTGCTTTGAAAGCTATGAACGGTGTGGAGGTTCAAGGTCGGCCCTTGCGATTGAATCGGGCATCAGATAGAACATCATCGTCATCTGTGCCTCCAGTAATTGAGGAAAATATGAAAAACAACGTTGATAGCTTGGAATTGGTTTCTAGTGCCAGCACGTGA 972 0.4105 MAATIASASSSIFNRIYNLSFIHSSISLTTTNFHQRPISHKHFNLILNSQSFNLSPLPLQSLHPPFAAEVEFQTSQDTTISQQEEPETEQETSDKPQQEEEEQKVSTSDDAGRLYVGNLPFTITSSQLTEIFAEAGTVVSVEIVYDRVTNRSRGFAFVTMKSVEEAKVAIQMFDGSQVGGRSAKVNFPEVPKGGERLVLVQKNRDNYKGFVDSPHKIYAGNLGWGLNSQDLRDAFAEQPGILGAKVIYEKDNGRSRGFGFVTFETAENLKAALKAMNGVEVQGRPLRLNRASDRTSSSSVPPVIEENMKNNVDSLELVSSAST* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0659 323 MobiDBLite consensus disorder prediction 289 305 - -
Tpr6g0659 323 SUPERFAMILY RNA-binding domain, RBD 210 298 IPR035979 GO:0003676
Tpr6g0659 323 MobiDBLite consensus disorder prediction 287 306 - -
Tpr6g0659 323 SMART rrm1_1 113 186 IPR000504 GO:0003723
Tpr6g0659 323 SMART rrm1_1 216 289 IPR000504 GO:0003723
Tpr6g0659 323 Gene3D - 199 300 IPR012677 -
Tpr6g0659 323 CDD RRM_HP0827_like 113 189 - -
Tpr6g0659 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 190 IPR000504 GO:0003723
Tpr6g0659 323 MobiDBLite consensus disorder prediction 74 109 - -
Tpr6g0659 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 217 287 IPR000504 GO:0003723
Tpr6g0659 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 182 IPR000504 GO:0003723
Tpr6g0659 323 Gene3D - 68 196 IPR012677 -
Tpr6g0659 323 PANTHER OS02G0815200 PROTEIN 3 303 - -
Tpr6g0659 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 293 IPR000504 GO:0003723
Tpr6g0659 323 SUPERFAMILY RNA-binding domain, RBD 109 188 IPR035979 GO:0003676
Tpr6g0659 323 MobiDBLite consensus disorder prediction 88 108 - -
Tpr6g0659 323 PANTHER RNA-BINDING PROTEIN CP33, CHLOROPLASTIC 3 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0659 Tpr-Chr6 5376198 5378417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0659 99 294 Eukaryotic Initiation Factors Gene Family AT3G16380 35.468 1.87e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0659 - - gmx:100814852 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0659 6 5376198 5378417 Tpr6g0659 6 5376198 5378417 ECH
Tpr6g0659 6 5376198 5378417 Tpr1g2619 1 29889972 29892774 PCT