Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0658 ATGGCTATGCAAACTGTTTATCTGAAAGAACATGAAGGAATTGCACACAATTTTGTGGGGCAATTGTCATCTGGTGGTACTAATAATTCATCAACAGTACCATGGTGGAGTGGTTTTGGATCTCAATCAGTCTATGGAGAGTCTGGTGGCCAAATAAAATCCTTTTCATTGGAGCCACCTATCTCTGCTGTTGACCAACTTGCTGCAAGTAAGCAATCTATGTTGGGGAAAGGGCTAACTAATCACTTTACCATCTTTCCAGATGATTTTAAAATGTCAGGTGATGCACAAAAGCCTCATACAGCCATATCACTGCAGTCATCACTCCCTGATACTCCACCTCGTTTCGAGCTAGGATTTAATCAACCTATGATCTGTACAAAATATCCTTATGCAGATCAATTTTATGGACTCATCTCAACTTATGGACCACAAATTCCGGGGCGTGTAATGCTGCCACTTAACATGACATCTGATGATGGACCGATTTATGTAAATGCTAAGCAGTACCATGGAATCATTAGACGTCGGCAGTCCCGCGCCAAAGCTGTACTTGGCCAGAAATTGATTAAACGCCGTAAGCCCTACATGCATGAGTCACGCCATCTCCATGCATTGCGGCGACCAAGAGGATGCGGTGGTCGCTTCTTGAACACAAAGAAATCTGCTAGTGGAGATGATAAAGCGGGAAGTAAAGTGCATAAATTTGGCGGTCAACAATTGCAGTGCAGCGGCTCTCAGAGTTCTGAACTCCTTGAATCTGATGTTGGAGCTTTAAATTCCTCAAAAGAAACTAACGGAAGCAGTCCGAATATTTCTGGGTCCGAGGTGACTAGTTTCTATTCAAGCGGAAATCTTGATGGCTTCAACATCAATAATCTTGTATCTAATGTCCACTCGTCGGCAAACATGATCGATCGTGGGCATCGCATTATCATGCCCACCAAATGGGTTACAGCAGCTGGCAACTGCTGTAACCTTAAAGCTTGA 990 0.4354 MAMQTVYLKEHEGIAHNFVGQLSSGGTNNSSTVPWWSGFGSQSVYGESGGQIKSFSLEPPISAVDQLAASKQSMLGKGLTNHFTIFPDDFKMSGDAQKPHTAISLQSSLPDTPPRFELGFNQPMICTKYPYADQFYGLISTYGPQIPGRVMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLGQKLIKRRKPYMHESRHLHALRRPRGCGGRFLNTKKSASGDDKAGSKVHKFGGQQLQCSGSQSSELLESDVGALNSSKETNGSSPNISGSEVTSFYSSGNLDGFNINNLVSNVHSSANMIDRGHRIIMPTKWVTAAGNCCNLKA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0658 329 SMART cbf3 158 219 IPR001289 GO:0003700|GO:0006355
Tpr6g0658 329 Gene3D - 159 221 - -
Tpr6g0658 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 3 328 IPR001289 GO:0003700|GO:0006355
Tpr6g0658 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 162 216 IPR001289 GO:0003700|GO:0006355
Tpr6g0658 329 ProSiteProfiles NF-YA/HAP2 family profile. 159 219 IPR001289 GO:0003700|GO:0006355
Tpr6g0658 329 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 3 328 - -
Tpr6g0658 329 PRINTS CCAAT-binding transcription factor subunit B signature 162 184 IPR001289 GO:0003700|GO:0006355
Tpr6g0658 329 PRINTS CCAAT-binding transcription factor subunit B signature 193 216 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0658 Tpr-Chr6 5370678 5374680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0658 35 328 CCAAT-HAP2 Transcription Factor Family AT3G05690 45.860 9.09e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tpr6g0658 CBFB_NFYA 2.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0658 K08064 - gmx:100527677 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0658 6 5370678 5374680 Tpr1g4422 1 51863967 51868257 PCT