Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0647 ATGGAAAGCAAAACTGAAAAACAAATGACATCGGCCGCGGCCTTTGTTGAAGGTGGCGTTCAAGAATCTTGTGATGATGCTTGCAGCATATGCCTTGAAGAGTTTTGTGATAATGATCCTTCAACTCTCACAGTTTGTCGACACGAGTTTCACCTACAGTGTGTTCTTGATTGGTGTCAAAGAAGCTCACAATGTCCTATGTGTTGGCAACCTATTAGTTTGACCGATCCTACCGGTCAAGAATTATTTAAGGCGGTAGAGCAAGAAAGGAATTGGTGGGCCACTTCATCTAGAAATGTCAATACCTCTCATCCACGTGAAGGCGTCAATGATTATAATTTAGAAGAGAGAATACTTCAACATTTAGCTGTTGTTGCATCAAACGAAAGAATACATCAACTTGGTCGAAGGGAAGGACAACAAATTCAACCAAGACAACGGACAGTACAATTTCAAACTGAAAGTTCTTCAACTAATGGATCTACTAATATGGAATCAAATGACCAAGAAACTTATTCTAGGGATAGAAGTGATGCGGCTAATTCTTCCCAGATAAACCAAAATAGAGCAAGGCCATCAGAATCGCACTCTTTTTCAGATACTTTGCGATCTAGACTTAATGCAGCGTCGATGAGATATAAAGAGTCAATTTCAAAGGGTACAAGGTGTTGGAAGAATAAATTGTTGTTTTCTCGAAGTTCTTCCATCGCTGAAGTTGGAACAGATGCAAGAAAAGAGATGAACCCAGGAACTTCTAGAGCATCTCAATCAAGGAAATTCATTGGAGCTAAGAAAAAACATAGAGTTCCTAAAACTTCTTTGTCAAATGGTTTGAAGGAAGGTTCTATAGGAGAGGCAAGCAACCAAAATTGTGTTGAAGTTGATGAAAAATATTTTTCATGTGACAACAGTACTCCAACTACTTCTTCAACCGGTTCACATTCAAATTGA 951 0.388 MESKTEKQMTSAAAFVEGGVQESCDDACSICLEEFCDNDPSTLTVCRHEFHLQCVLDWCQRSSQCPMCWQPISLTDPTGQELFKAVEQERNWWATSSRNVNTSHPREGVNDYNLEERILQHLAVVASNERIHQLGRREGQQIQPRQRTVQFQTESSSTNGSTNMESNDQETYSRDRSDAANSSQINQNRARPSESHSFSDTLRSRLNAASMRYKESISKGTRCWKNKLLFSRSSSIAEVGTDARKEMNPGTSRASQSRKFIGAKKKHRVPKTSLSNGLKEGSIGEASNQNCVEVDEKYFSCDNSTPTTSSTGSHSN* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0647 316 MobiDBLite consensus disorder prediction 139 168 - -
Tpr6g0647 316 ProSiteProfiles Zinc finger RING-type profile. 28 68 IPR001841 -
Tpr6g0647 316 MobiDBLite consensus disorder prediction 135 200 - -
Tpr6g0647 316 SMART ring_2 28 68 IPR001841 -
Tpr6g0647 316 Coils Coil 315 316 - -
Tpr6g0647 316 MobiDBLite consensus disorder prediction 176 200 - -
Tpr6g0647 316 Pfam Ring finger domain 27 68 IPR001841 -
Tpr6g0647 316 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 3 141 - -
Tpr6g0647 316 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 151 315 - -
Tpr6g0647 316 MobiDBLite consensus disorder prediction 242 286 - -
Tpr6g0647 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 76 IPR013083 -
Tpr6g0647 316 SUPERFAMILY RING/U-box 21 75 - -
Tpr6g0647 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 151 315 - -
Tpr6g0647 316 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 3 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0647 Tpr-Chr6 5257123 5260242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0647 26 76 C3H Transcription Factor Family AT4G23450 49.020 2.12e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0647 K19043 - gmx:100819110 320.087
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0647 6 5257123 5260242 Tpr6g0647 6 5257123 5260242 ECH