Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0646 ATGAGACCTACGGAATTACTTAGGGTTTTGAACAAGCAATTTCTCGGAATCGCCGGCGACACTGCAAATGCCATTGCTAAGAATCTTCCATCGTCGTCGCCTATCGTGTCGCGTAAACCGGCTTTTATTGATGCATTTCTGCATAAGATGAAAAAGAATCCAGAACTTCTGAAAAACAAAACCATTTGGTCACGGAGATCTACTATTTTGCCGGAATTTGTTGATTCTCAGGTCAAGATTTACAACGGAAAAACAACAATTCGTTGTAAGATCACCGAGGGAAAAGTCGGTCATAAGTTCGGTGAGTTTGCTCTCACTAGGAAACGTAAATCTAGAGATCAACCTAATGCTAAAGTTAAGCAACTCAAGAAAAAGAAGTGA 381 0.4042 MRPTELLRVLNKQFLGIAGDTANAIAKNLPSSSPIVSRKPAFIDAFLHKMKKNPELLKNKTIWSRRSTILPEFVDSQVKIYNGKTTIRCKITEGKVGHKFGEFALTRKRKSRDQPNAKVKQLKKKK* 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0646 126 Pfam Ribosomal protein S19 45 110 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 PANTHER 40S RIBOSOMAL PROTEIN S19, MITOCHONDRIAL 30 121 - -
Tpr6g0646 126 SUPERFAMILY Ribosomal protein S19 38 111 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 Hamap 30S ribosomal protein S19 [rpsS]. 6 118 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 ProSitePatterns Ribosomal protein S19 signature. 82 106 IPR020934 GO:0003723
Tpr6g0646 126 PRINTS Ribosomal protein S19 family signature 62 81 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 PRINTS Ribosomal protein S19 family signature 82 94 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 PRINTS Ribosomal protein S19 family signature 94 109 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 MobiDBLite consensus disorder prediction 106 126 - -
Tpr6g0646 126 Gene3D 30s Ribosomal Protein S19; Chain A 35 121 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr6g0646 126 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 30 121 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0646 Tpr-Chr6 5255800 5256668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0646 36 117 Cytoplasmic Ribosomal Protein Gene Family AT1G04270 28.571 3.93e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0646 K02965 - gmx:100782150 207.994