Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0637 ATGCGGAGTTTAATAATGAAGAACTTGTTATCCCGTATCAAAACAAGAAGAAAAAATAACAAATTCATCAGAAACAGAAACAAAAACATTCTCAAACATAAAAAAAACCAAAACCGCATTTCTGTCATTGAAGAAGAAGAAGATACAGAAGAAGGTTTCAGCATCAAAAGCTCTGCCCCATCACAAACTCACGGTGTTCAACCCTTAGGAAATCTCTATCTCAATCCAGGTTCCATCAACTCTAGAGACACTGGTTTAGGTAATCTTCATACTCTTACAGATGAACTTGTTCTTGATATTCTGGGTTTTTTGGATGGTACTAGTTTAGGTGTTTTAGCTTCTGTGAGCAAATCGTTTTATGTTTTTACCAATCATGAACCCATTTGGAGGAATCTTGTGTTGGATAATCTTATTGATGGGTTTCAGTATAATGGGTCATGGAAATCTACTTTTGTTTCTGCTTATTACCCTTCATTTGATATCTCGAGTAGCGATCGTAGGAGTTTTAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGTTATGTGCTAATCTTGAAATGAAACCTGAATGGTTGGAGAGGGATAATATTGTTCGGAAGAGAGGTATTTCGGTTGAAGAATTTGTGGCGAGTTTTGAGGAGGTTAATAAGCCGGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGGAATTGGGATAGAGATTATTTGGTCAAGTTATGTGGTGATGATGTTAAGTTTGCAGTTGGGCCTGTGGAGATGAAGCTTAGGGACTATTATAGATATTCGGATCAAGTTAGAGAAGAAAGGCCATTGTATTTGTTTGATCCGAAGTTTGCTGAAAAAGTTCCGAAATTGGGTTTGGATTATGAAGTTCCGGTGTATTTTCGGGAGGACTTGTTTGATGTTTTGGGTAATGAGAGACCTGACTACAGATGGATTATTATGGGACCAGCTGGATCTGGATCGTCTTTTCACGTTGATCCAAATTCAACTTCAGCTTGGAATGCTGTGATCAAAGGGTCGAAGAAATGGATATTGTTTCCTCCCGATGTTATTCCGCCTGGTGTTCATCCTAGTCCTGATGGTGCAGAGGTGGCATCTCCTGTTTCAATAATTGAATGGTTCATGAACTTTTATGGCGCAACTAAGAATTGGAAAAAGAGACCAATTGAGTGCATATGTAAAGCTGGGGAGGTTATCTTTGTACCTAATGGATGGTGGCATTTGGTGATCAACCTGGAGGAATCAATTGCCATAACACAAAATTATGTTAGCAGGAGAAATTTGTTAAATGTCTTGGATTTTCTTAAAAGGCCGAACGCGAGCACACTGGTATCTGGAACAAAGGATAGAGTAAATTTGCATGATAAGTTTAAGAATGCTATTGAGGCTTCTTTTCCTGGAGCAATTGATGAACTGACCCAAAAAGAAGAAGAGAAAAAGATCCAGCAAAGGAAACTTTCCTTCTGGGATTCTGTTGCAGATGTGGGAGCTTTCAAGTTCTCTTTCTAG 1530 0.383 MRSLIMKNLLSRIKTRRKNNKFIRNRNKNILKHKKNQNRISVIEEEEDTEEGFSIKSSAPSQTHGVQPLGNLYLNPGSINSRDTGLGNLHTLTDELVLDILGFLDGTSLGVLASVSKSFYVFTNHEPIWRNLVLDNLIDGFQYNGSWKSTFVSAYYPSFDISSSDRRSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKRGISVEEFVASFEEVNKPVLLEGCIDNWDALRNWDRDYLVKLCGDDVKFAVGPVEMKLRDYYRYSDQVREERPLYLFDPKFAEKVPKLGLDYEVPVYFREDLFDVLGNERPDYRWIIMGPAGSGSSFHVDPNSTSAWNAVIKGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKRPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNASTLVSGTKDRVNLHDKFKNAIEASFPGAIDELTQKEEEKKIQQRKLSFWDSVADVGAFKFSF* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0637 509 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 55 504 - -
Tpr6g0637 509 SMART fbox_2 92 132 IPR001810 GO:0005515
Tpr6g0637 509 SUPERFAMILY F-box domain 84 154 IPR036047 GO:0005515
Tpr6g0637 509 Pfam Cupin-like domain 210 429 IPR041667 -
Tpr6g0637 509 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 55 504 - -
Tpr6g0637 509 SUPERFAMILY Clavaminate synthase-like 202 444 - -
Tpr6g0637 509 ProSiteProfiles F-box domain profile. 86 132 IPR001810 GO:0005515
Tpr6g0637 509 Gene3D Cupin 160 431 - -
Tpr6g0637 509 ProSiteProfiles JmjC domain profile. 286 446 IPR003347 -
Tpr6g0637 509 SMART cupin_9 277 446 IPR003347 -
Tpr6g0637 509 Gene3D - 82 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0637 Tpr-Chr6 5203054 5205942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0637 77 435 Glycosyltransferase AT1G78280 38.211 1.25e-75 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tpr6g0637 Cupin_8 2.6e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0637 - - gmx:100782241 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0637 6 5203054 5205942 Tpr6g0637 6 5203054 5205942 ECH