Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0606 ATGGCTACCACCAATGCAGGCACAGCGCAGCCGCGTACACTCTCTGAGAAAGAAGCCGCTATCCAAATGATGTTGGCTGCCGATGTGCATCTCGGTACCAAGAACTGCGATTTCCAAATGGAACGCTACATCTTCAAGCGCCGCGATGACGGTATTTATATTATCAATCTTGGTAAGACATGGGAAAAGCTTCAACTTGCTGCTAGGGTTATTGTTGCAATTGAAAATCCTAAGGATATCATTGTTCAATCTGCTAGACCTTATGGACAAAGGGCTGTTCTCAAATTTGCTCAGTATACTAGTTGTCATGCTATTGCTGGAAGACACACTCCTGGTACTTTCACCAATCAGCTTCAAACTTCATTCAGTGAGCCTCGTCTTCTTATCCTTACCGATCCAAGAACCGATCACCAGCCAATTAAGGAAGCTGCTCTTGGAAATATTCCAACAATTGCTTTCTGTGACACTGATTCTCCTATGAATTATGTTGACATTGGTATCCCTGCCAACAACAAAGGAAAGCACAGCATTGGTTGTCTGTTTTGGCTTCTGGCTAGGATGGTGTTGCAGATGCGTGGCACTATTCGTCCTGGCCATAAGTGGGATGTCATGGTGGATCTATTCTTCTACAGAGATCCTGAGGAGGCCAAGGAGGAAGAAGTGGATGAAGTTCCTGTTCAAGATTATGCCATTGCTGATTTCAATGCAGTTGCGGCACCCAATGATGGACAGTGGCCTGCTGCAATTGATCAGCCATGGACTGATGCCGTTCCACAACCTATTGCAGCAGCTCCTGGAGTCAACTGGGCAGCCTCAGAAGCTGTTGCAGGGGATTGGGGTGAAGCTGTTCCACCTCCTAACCAAATACCTCCTCCTGGAGTTGAATCTATCCAAGCAACTGGCTGGGAATAA 912 0.466 MATTNAGTAQPRTLSEKEAAIQMMLAADVHLGTKNCDFQMERYIFKRRDDGIYIINLGKTWEKLQLAARVIVAIENPKDIIVQSARPYGQRAVLKFAQYTSCHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMNYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYRDPEEAKEEEVDEVPVQDYAIADFNAVAAPNDGQWPAAIDQPWTDAVPQPIAAAPGVNWAASEAVAGDWGEAVPPPNQIPPPGVESIQATGWE* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 Hamap 40S ribosomal protein SA [rps-0]. 8 272 IPR027498 GO:0003735|GO:0006412|GO:0015935
Tpr6g0606 303 MobiDBLite consensus disorder prediction 277 303 - -
Tpr6g0606 303 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 211 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tpr6g0606 303 Gene3D - 20 224 - -
Tpr6g0606 303 PANTHER 40S RIBOSOMAL PROTEIN SA 13 293 - -
Tpr6g0606 303 PANTHER 40S RIBOSOMAL PROTEIN SA 13 293 IPR005707 GO:0003735|GO:0006412|GO:0015935
Tpr6g0606 303 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Tpr6g0606 303 SUPERFAMILY Ribosomal protein S2 17 206 IPR023591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0606 Tpr-Chr6 4977862 4979842 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0606 1 279 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.216 2.52e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0606 K02998 - gmx:100805318 518.079