Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0602 ATGTCGAAATTCTTTGCTCAGGCTGGCGGTTCTTCTGATGATGATGATAGTGATTTGGATCAATCGGTTGATGATGTGCCGGTTGAACCTGATAATGATCCTACTTCAAGTAGGTATAGGGTGGATAATGCTAGTGACAGCGATGACGATGATGGCCAAAGGCGTGTTGTTAGGTCGGCAAGAGATAAGCGATATGAAGAGATGGCTTCAACGGTTGACCAGATGAAGAATGCAATGAAGATCAATGATTGGGTGAGTTTGCAAGAGAGTTTTGACAAGATCAACAAACAACTTGAGAAAGTGATGCGTGTTGCTGAGACTGATAAGGTCCCTAACCTTTATATTAAGGCTCTTGTCTTTTTGGAAGATTTCTTGGCTCAGGCTTTGGCAAATAAGGAGGCCAAGAAAAAGATGAGCAGTAGCAATGCCAAAGCCTTGAATTCGATGAAGCAGAAATTGAAGAAGAATAATAAGCAATATGAGGAGTTGATTACTAAATGCAGGGAGAGTCCTGAGAGTGAGGAGGAAAAGGACGAGGATGAGGAGAGCGATGAAGAAGATGATAGTGATGGTGAGACTATTGAGCCCGAGCAGCTTGGGAATCAGGAACCTAGATCGGATGATGATGATGATGATAGGGATGATGCTGGTGATGGACCTTGGGACAAAAAGCTTAGCAAGAGAGATAGACTTTTGGATAGACAGCTCATGAAAGACCCTAGGGAGGTCACATGGGATATTGTTAACAAGAAGTTTAAAGAGATTGTGGCAGCTAGGGGAAGGAGGGGAACTGGAAGGTTTGAACAGGTTGAACAACTTACCTTCTTAACAAAAGTGGCTAAAACACCAGCACAGAAGCTTGAAATTCTTTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTCAGTGGCCATATGCCCATAACTGTGTGGAAAAAATGTGTTCAGAATATGCTGCTCATCCTTGATATTCTAGTTCAATTTCCAAACATAAAGGTTGATGATTCAGTGGAGCCAGATGAGAATGAAACTCAAAAAGGGGCTGACTATGATGGACCAATTAAGATTTGGGGTAACTTAGTTGCCTTCTTAGAAAAAATAGATACTGAGTTTTTCAAGAGCTTGCAGTGCATAGATCCTCATACGCGTGAGTACGTCCAGAGACTCCGAGATGAGCCCATGTTTTTGGTTCTTGCTCAAAATGTCCAGGAATATCTTGAAAGGAGTGGAGATTTCAAATCATCTTCTAAGGTGGCCTTGAGGAGGGTTGAACTCATTTACTACAAACCACAAGAGGTTTATGATGCCATGAGAAAATTGGCTGAGCTGACAGAAGATGGAGGTAATGAAGGCGAGGCTAGCGAGGAGGCCAAAGGGTTTGAGGATACAAGAATTCCTACTGCATTTGTTGTTACTCCAGAGCTTGTGTCTCGGAAACCCACCTTTCCGGAGAATAGCAGGGCCCTAATGGATGTATTAGTTTCACATATATACAAATATGGCGACGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCACCATGCTCTCCTTGATGAGTTCTCAATTGCCCGTGATCTGCTGCTTATGAGTCATTTGCAAGATAATGTTCAGCACATGGACATTTCAACACAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTCTTTGCGCTTTTCGGATTGGATTGATTTCTGAAGCACACGGATGCCTATCTGAACTTTATTCAGGTGGAAGGGTGAAAGAGTTGCTTGCACAAGGTGTGTCACAAAGGAGTCATCATGAGAAGACTCCAGAACAGGAAAGGTTGGAAAGAAGACGCCAGATGCCATATCATATGCACATAAATCTTGAGCTCCTGGAAGCAGTGCATCTTATATCTGCTATGCTGCTGGAGGTTCCGAATATGGCAGCCAATGTTCATGATCCAAAGCATAGGGTCATCAGTAAGAATTTCCGCCGCTTGTTTGACGGCAGTAATAACCAAACGTTGACCGGTCCTCCTGAGAGTGTCAGAGATCACATTATGGCTGCCGCTAGGGTTCTTATTAAAGGAGACTTCAACAAGGCTTTTGAAGTTATTACATCTCTTGATGTATGGAAATTTGTTAAAAATAGAGACAATGTATTGGCAATGCTGAAGGACAAAATCAAGGAGGAGGCACTTAGGACATATCTCCTTACCTTCTCTTCATCCTATGAGTCTCTGAGTCTGGATCAAGTCACGAAATTTTTTGACCTCTCTGTTCCTCGTACTCATAGCATTGTGAGTAGGATGATGATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTTTTCCAAAATGTTGAGCACTCTAGACTTCAAGCATTGGCATTCCAGTTGACAGAGAAATTATCTATCCTTGCAGAGAGTAATGAAAGAGCCACAGAGGCAAGAATAGGTGGTGGATTGGATCTGCCTGCAAGACGAAGGGATGGACAGGACTATGCTGCTGCTGCTTCTGGCGGAGGTGGTGGAACAGGGCCTTCAGGTGGTAGGTGGCAGGACTTGTCCCATTCTCAGCCACGGCAAGGAAGTGGACGTGCAGGATATGGAAATGCTGGTGGAAGGCCATTGGCATATGGTCAAGCAGCTAGGGGTGGCTATTCAAGGGATCGAGTGGGGCGTGCTGGTTATCAGAGTTCAGGGAGGAGTAATCAAGGGGGTTCAGGACTGAGGGGACCCCAGGGAGATGTATCTACTCGCATGGTTAGCCTTAAGGGAGTTCGTGCTTAA 2787 0.4435 MSKFFAQAGGSSDDDDSDLDQSVDDVPVEPDNDPTSSRYRVDNASDSDDDDGQRRVVRSARDKRYEEMASTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVAETDKVPNLYIKALVFLEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEELITKCRESPESEEEKDEDEESDEEDDSDGETIEPEQLGNQEPRSDDDDDDRDDAGDGPWDKKLSKRDRLLDRQLMKDPREVTWDIVNKKFKEIVAARGRRGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLSGHMPITVWKKCVQNMLLILDILVQFPNIKVDDSVEPDENETQKGADYDGPIKIWGNLVAFLEKIDTEFFKSLQCIDPHTREYVQRLRDEPMFLVLAQNVQEYLERSGDFKSSSKVALRRVELIYYKPQEVYDAMRKLAELTEDGGNEGEASEEAKGFEDTRIPTAFVVTPELVSRKPTFPENSRALMDVLVSHIYKYGDERTKARAMLCDIYHHALLDEFSIARDLLLMSHLQDNVQHMDISTQILFNRAMSQLGLCAFRIGLISEAHGCLSELYSGGRVKELLAQGVSQRSHHEKTPEQERLERRRQMPYHMHINLELLEAVHLISAMLLEVPNMAANVHDPKHRVISKNFRRLFDGSNNQTLTGPPESVRDHIMAAARVLIKGDFNKAFEVITSLDVWKFVKNRDNVLAMLKDKIKEEALRTYLLTFSSSYESLSLDQVTKFFDLSVPRTHSIVSRMMINEELHASWDQPTGCIVFQNVEHSRLQALAFQLTEKLSILAESNERATEARIGGGLDLPARRRDGQDYAAAASGGGGGTGPSGGRWQDLSHSQPRQGSGRAGYGNAGGRPLAYGQAARGGYSRDRVGRAGYQSSGRSNQGGSGLRGPQGDVSTRMVSLKGVRA* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0602 928 MobiDBLite consensus disorder prediction 13 27 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 42 69 - -
Tpr6g0602 928 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 40 647 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr6g0602 928 MobiDBLite consensus disorder prediction 135 153 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 1 69 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 174 194 - -
Tpr6g0602 928 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 1 867 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr6g0602 928 ProSiteProfiles PCI domain profile. 616 788 IPR000717 -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 832 873 - -
Tpr6g0602 928 SUPERFAMILY "Winged helix" DNA-binding domain 712 787 IPR036390 -
Tpr6g0602 928 Pfam PCI domain 656 784 IPR000717 -
Tpr6g0602 928 SMART PINT_4 717 805 IPR000717 -
Tpr6g0602 928 Coils Coil 143 170 - -
Tpr6g0602 928 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 2 927 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 896 911 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 850 864 - -
Tpr6g0602 928 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 2 927 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Tpr6g0602 928 MobiDBLite consensus disorder prediction 135 226 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 154 173 - -
Tpr6g0602 928 MobiDBLite consensus disorder prediction 891 928 - -
Tpr6g0602 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 717 805 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0602 Tpr-Chr6 4945507 4949831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0602 2 928 Eukaryotic Initiation Factors Gene Family AT3G56150 67.163 0.0 1156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0602 K03252 - gmx:100781967 1413.67