Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0593 ATGCCGGCTGGACATGGTTTAAGATCTCGCACGAGAGATTCATTCTCTCGTCCATTCAGGAAGAAGGGTACAATCGCTCTTGCTACTTACCTCAGAACCTATCACATCGGCGATTATGTTGATATTAGGGTTAACGGCGCCGTTCACAAAGGTATGCCTCATAAATTCTACCATGGTCGTACCGGTCGTGTCTGGAATGTCACCAAACGTGCCATTGGCGTTGAGGTGAACAAGCAGGTTAGGAACAAGATTTTGAGAAAGAGGATTCATGTCCGTGTGGAGCACGTTATGCCTTCTAGGTGCACTGAGGAGTTCCGTTTGAGGAAGATTAAGAACGATCAACTCAAGGCTGAGGCTAAGGCCAAGGGTGAGGTCATATCTACCAAGCGCAAGCCAGAAGGACCCAAACCTGGTTTCATGGTTGAAGGAGCTACACTGGAAACAGTTACTCCCATTCCATATGATGTGGTTAACGATCTCAAGGGAGGATACTAG 495 0.4747 MPAGHGLRSRTRDSFSRPFRKKGTIALATYLRTYHIGDYVDIRVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEVNKQVRNKILRKRIHVRVEHVMPSRCTEEFRLRKIKNDQLKAEAKAKGEVISTKRKPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0593 164 PANTHER 60S RIBOSOMAL PROTEIN L21-1 1 164 - -
Tpr6g0593 164 MobiDBLite consensus disorder prediction 121 141 - -
Tpr6g0593 164 Pfam Ribosomal protein L21e 1 101 IPR001147 GO:0003735|GO:0005840|GO:0006412
Tpr6g0593 164 Gene3D - 99 156 - -
Tpr6g0593 164 Gene3D Ribosomal protein L21 1 97 IPR036948 GO:0003735|GO:0005840|GO:0006412
Tpr6g0593 164 SUPERFAMILY Translation proteins SH3-like domain 3 99 IPR008991 -
Tpr6g0593 164 ProSitePatterns Ribosomal protein L21e signature. 37 62 IPR018259 GO:0003735|GO:0005840|GO:0006412
Tpr6g0593 164 PANTHER 60S RIBOSOMAL PROTEIN L21 1 164 IPR001147 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0593 Tpr-Chr6 4857639 4859373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0593 1 164 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 81.098 6.25e-102 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0593 K02889 - gmx:100305629 324.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0593 6 4857639 4859373 Tpr6g0593 6 4857639 4859373 ECH