Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr6g0584 | ATGGCGGAAACGAAGGAAGAGAGTAAATCTAACGAAGAGAGTGTGAAATTGTTCGTAGGTCAAGTACCTAAACACATGACTGAAGATGAATTACTTACATTGTTCAAAGAATTTGCTATAGTTGACGAAGTCAACATCATCAAAGACAAAGCTACTCGCGCTTCTCGAGGTTGTTGTTTCGTGATTTGTCCTTCTAGAGATGAAGCTGATAAGGCCGTTAATGCCTGTCACAATAAGAAAACGTTACCCGGGGCATCTAGTCCATTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTCATTGGCATGCTTCCAAAGAACGTTTCTGAAGTTGAAGTATCTGCACTTTTCTCCAAGTATGGAACTATAAAGGATTTACAAATTTTAAGAGGTTCTCAGCAGACAAGTAAAGTAGGTTGTGCATTTTTGAAGTACGAAACCAAAGAACAAGCTCTTGCTGCTTTGGAGGCAATCAATGGAAAGCACAAAATGGAGGGTTCAAGTGTTCCTTTAGTTGTCAAATGGGCTGATACTGAAAAGGAAAGACAAGCCCGAAGAGCTCAGAAAGCACAGTCTCAAGCTTCAAATGTGGGACACGCTGATTCTCAGCATCCTTCATTGTTTGGAGCCATGCCTATGGGTTATGTTCCTCCATATAATGGTTATGGTTATCAGGCTCCTGGAGGTTTTGGGCTCATGCCGTACCGCATGCCGCCAATGCAGAATCAACCCGGTTACCACAATATGATGCCCCACATGAATCAAGGAAATGCATTGCGGCCTGATCTTGGCCCCAATATCAATCCTAGAAACTATCATGTGCCTCCTGCAAGTTATGTTGGATCTTATCCTGCTGTGCCAGGTCTACAACATCCAATGGCATATCCTGGAGGAATGATTAGTCCAAGGCCTATGAATAGTCCTCCTGGTTCTGTTTCGCCTTCTGGTGGAAATGGCAACTCCGCTACATCATCAGGGTCCAGCAGAAATTCTGGCGGTGGTCAGATTGAAGGACCACCTGGCGCGAATCTATTTATCTATCACATACCTCAAGAATTTGGAGATCAAGAGCTTGCTAATGCTTTTCAACCATTTGGTAGAGTTTTGAGTGCTAAAGTTTTTGTTGACAAAGCAACCGGAGTCAGCAAATGTTTTGGCTTTGTAAGCTATGATTCCCCAGAAGCTGCTCAATCTGCCATTAGTATGATGAATGGATACCAATTAGGAGGTAAGAAATTAAAGGTTCAGCATAAGAGGGACAACAAACCCGGTAAACCTTACTGA | 1302 | 0.4293 | MAETKEESKSNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVGHADSQHPSLFGAMPMGYVPPYNGYGYQAPGGFGLMPYRMPPMQNQPGYHNMMPHMNQGNALRPDLGPNINPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPMNSPPGSVSPSGGNGNSATSSGSSRNSGGGQIEGPPGANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY* | 434 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr6g0584 | 433 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 103 | 184 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | SMART | rrm1_1 | 104 | 180 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | SMART | rrm1_1 | 349 | 422 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | SMART | rrm1_1 | 16 | 92 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 348 | 426 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | MobiDBLite | consensus disorder prediction | 303 | 345 | - | - | |
Tpr6g0584 | 433 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
Tpr6g0584 | 433 | CDD | RRM3_CELF1-6 | 350 | 422 | - | - | |
Tpr6g0584 | 433 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 15 | 96 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 15 | 30 | IPR002343 | GO:0003723|GO:1990904 | |
Tpr6g0584 | 433 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 108 | 123 | IPR002343 | GO:0003723|GO:1990904 | |
Tpr6g0584 | 433 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 123 | 135 | IPR002343 | GO:0003723|GO:1990904 | |
Tpr6g0584 | 433 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 165 | 182 | IPR002343 | GO:0003723|GO:1990904 | |
Tpr6g0584 | 433 | CDD | RRM1_2_CELF1-6_like | 104 | 180 | - | - | |
Tpr6g0584 | 433 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 17 | 81 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 350 | 420 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 105 | 169 | IPR000504 | GO:0003723 | |
Tpr6g0584 | 433 | CDD | RRM1_2_CELF1-6_like | 16 | 92 | - | - | |
Tpr6g0584 | 433 | MobiDBLite | consensus disorder prediction | 186 | 209 | - | - | |
Tpr6g0584 | 433 | Gene3D | - | 99 | 194 | IPR012677 | - | |
Tpr6g0584 | 433 | Gene3D | - | 2 | 98 | IPR012677 | - | |
Tpr6g0584 | 433 | PANTHER | RNA BINDING PROTEIN | 9 | 420 | - | - | |
Tpr6g0584 | 433 | MobiDBLite | consensus disorder prediction | 316 | 340 | - | - | |
Tpr6g0584 | 433 | SUPERFAMILY | RNA-binding domain, RBD | 103 | 428 | IPR035979 | GO:0003676 | |
Tpr6g0584 | 433 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 97 | IPR035979 | GO:0003676 | |
Tpr6g0584 | 433 | Gene3D | - | 319 | 425 | IPR012677 | - | |
Tpr6g0584 | 433 | PANTHER | RNA-BINDING PROTEIN-DEFENSE RELATED 1-RELATED | 9 | 420 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr6g0584 | Tpr-Chr6 | 4789268 | 4795669 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr6g0584 | 333 | 431 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.577 | 1.62e-09 | 58.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr6g0584 | K13207 | - | gmx:100813239 | 756.903 |