Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0573 ATGGGTGGTTCTCCTAAAAACCCTCGACCATGTGATTACTGTGGCCATTCAACTGCAGTTCTATACTGCAGAGCAGATTCAGCGAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAGCTTTTCTCCAAACACACACGCTCCTTAATCTGTGATTCATGCGATGATTCCCCTGCTACAATCCTCTGTTCAACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAAACACAATCTTTCACTCTCTTCTCCACATGAAAGAAGACCTCTTGAGGGTTTTACAGGGTGCCCTTCTGTTACTGAGCTTTTATCAATTCTGGGGTTGCAGGATATTGGGAAAAAATCGTTGCTTTTGCCTCAGGAAAGTGTTGGAGATGGTTATGTAGGGTATGAGATTGAAGGGCTTTCTGATTTGTTTGTTTGGGATGCTCCTACTTTTGTTAGTCTTGATGATCTTATTTCTACTTCTCCTTCTTCTCATAATTATAGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGTAGACACCGAGAAGAGATTTTAAATCAGCTTCGAGGGTTGACGAAGTCTGAGCCCTATGATCCTGAAGAGTATACACCACCGACAAATTTATCTATAGGTTTTGAACGCGACGTAAAGGCTGATATTGTTCCTTCAAATGAGTGGCTCAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTGATACATCATTCATAGCTCATACCGAAGATATTCCAGTTAATCATTCCGTATCTGCTGTTGGGGAGCCTCATACTCATGGCAACAACGAAGGGACGCCTTCAGAATCTCTTAAGTCTGAAATCTTATCAACTACTCCTAAAGCTGTTCCACCTCCATATGAGATAGCGAGTCAAGAACGGGATTCTGCATTATTACGGTACAAACAGAAGAAGAAAACAAGAAGATACGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGACCAGGACACGAGTTAAGGGCCGATTTGCAAAGATAGAGCACTGA 1050 0.4276 MGGSPKNPRPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWEKHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGYVGYEIEGLSDLFVWDAPTFVSLDDLISTSPSSHNYSAMEVPPLPKNRKAACGRHREEILNQLRGLTKSEPYDPEEYTPPTNLSIGFERDVKADIVPSNEWLRESSEPMYQVVPDTSFIAHTEDIPVNHSVSAVGEPHTHGNNEGTPSESLKSEILSTTPKAVPPPYEIASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAETRTRVKGRFAKIEH* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0573 349 CDD Bbox1_BBX-like 10 53 - -
Tpr6g0573 349 MobiDBLite consensus disorder prediction 266 284 - -
Tpr6g0573 349 Pfam CCT motif 305 346 IPR010402 GO:0005515
Tpr6g0573 349 CDD Bbox1_BBX-like 53 95 - -
Tpr6g0573 349 ProSiteProfiles Zinc finger B-box type profile. 49 95 IPR000315 GO:0008270
Tpr6g0573 349 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Tpr6g0573 349 Pfam B-box zinc finger 7 51 IPR000315 GO:0008270
Tpr6g0573 349 ProSiteProfiles CCT domain profile. 305 347 IPR010402 GO:0005515
Tpr6g0573 349 ProSiteProfiles Zinc finger B-box type profile. 6 53 IPR000315 GO:0008270
Tpr6g0573 349 SMART bboxneu5 54 95 IPR000315 GO:0008270
Tpr6g0573 349 SMART bboxneu5 6 53 IPR000315 GO:0008270
Tpr6g0573 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 13 7 349 - -
Tpr6g0573 349 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 7 349 - -
Tpr6g0573 349 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0573 Tpr-Chr6 4628293 4631463 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0573 9 320 C2C2-CO-like Transcription Factor Family AT2G47890 41.693 4.31e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr6g0573 zf-B_box 5.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0573 - - mtr:MTR_7g108150 634.795