Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0550 ATGATGGAGCTCTGGAACGACGGTTTATCGGAGCTGGAGATTGGTAGTTCCGTTGATTCAATCCAGAAGTTTTTAGGTTCTCAAAGAGAACTCTTACATAGCCAGATCGATCAGTTTCAGGAAATCGTCGTCACACAATGCAAACTCACCGGTGTCAATCCTCTTTCTCAAGAAATGGCTGCTGGTGCTTTGTCAATACAAATCGGAAAAAGACCTAGGGATTTATTAAATCCAAAGGCTGTAAATTACATGCAATCAGTTTTTTCTATTAAAGATGCAATTAGCAAGAAAGAATCTCGCGAGATCAGTGCTTTATTTGGTGTAACAGTAACGCAGGTGCGTGACTATTTCACTAGTCAACGTTCAAGAGTGAGGAAACAAGTTCAGTTGTCGAAGGAGAGGGCATTAAAATCTAATTCTTGTGCGGAATCTCTTGATGTGCAAATAAACTCTGATCCCGTGAGATCAATGAATCCAGCTCCCTTAAACTCTGTTGGTGCCACCAACGTGGAAGAAGCATCTTATTCCGCACAGGAAGCAGCTCTTTCTGACCTAGATGACTCAGATAAACAATTTGTTGAGAACATTTTTGGTCTAATGCAGAAAGAGGAAACATTTTGTGGACAGGAGAAATTGTTGGAGTGGATATTGACAATACGTAATTTTTCAGTCTTATTGTGGTTTTTGACCGGAGGAGGTGCAATGACTTTAGCAAATTGGTTGAGTAAAGCCGCCGTTGAAGAGCAAACGAGTGTGCTGCTTCTTGTCTTGAAGGTTCTTTGTCATTTGCCTTTACATAAAGCCCATCCTGCCCATATATCAGCTTTATTGCAGAGTGTTAATAGACTGCGGTTCTACAGGACATCAGACATATCTAACAGGGCAAGGGTTTTGTTATCAAAGTGGAGCAAATTGTTAACAAGGAACCAAGCCATAAAGAAACCCAATGGTGTTAAGCTTTCCGGTGATGGTCGAAAAGAGATAATACTTTCTCAGAGCATTGGTCAAACCATCGGCCCTGAATCATGGCATTTTGATGTTCCTGAAGACATTCTTGCTCTCTCAAATGAATTTTCAGATGATTTCAGGAAACCGGAATCTCAATCTGTGAAATTGTTACTATCCAGCTCAGATGATTATAATAAGAAACACCCCCTTGGTGTATCTTCATCTCAATCTAGAGAGCGCAGAAAAGTGCAATTGGTGGAACAGCCAGGATCGGTGAGTAGAAGCCCACAAGCGGCAAGGACAGGGCCGGTAAGTCAGGGCCGTCCTATGTCTGCTGATGATATCCAGAAAGCAAAAATGCGTGCATTATTTATGCAGAGTAAGTATGGGAAAACTGCTTCAAAAGAAAATAAAGCCAAAATCAATAGTCCAAGCAAATCTCAGACAAAGCAGGCAAGTATTGCAGTTTGCTCTTCTAAAGTTCCAGTGCCACTCAAAAATGAAGTAGACAAGAAACCTCTGCTGCTTCCCTCTAAAACTACTAATAGGCCAGAAGCTCCTAATTCTAAACTGAAAATGGATTTGAAGGAACCTCTCTGGGAGAAGTGCAAGAGGGTGAAAATACCCTGGAAAACACCAGCAGAAGTAGAACTTAAAGATACCTGGAGAGTTGGCGTTGGTGAAAATAGCAAAGAGGTTCATGTTCAGGAAAATAGAAACCACAGGGACAAAGAATCCATTTATAGGACAGTACAAGAGATGCCCCCTAACCCCAAGGAGCCTTGGGATCTCGAAATGGACTATGATGACTCTTTGACACTGGAAATTCCTATTGAACAGCTACCGGATGGTGATGGTCCTGAAATAGTAGACGAATCCAATCAATTTGAAACTCATGCTGCTGCTGTTCAAGCTGTGGCCTCCTCATCTTCAGCCAGTAATGCAGCCACTGCTGAACCTGATTTAGAGTTGCTTGCCGTACTGCTAAAAAATCCAGACTTGGTATTTGCCTTAACTTCTGGACAAGTTAGCAACGTATCAAATGAGGAAACCTTGAAGCTGCTTGACATGATCAAGAGAGGCACTGTAAACGTGGGATTAAGTGTAAATGCAAATGGCAACCCTGGTAATAGTGCAAAAGCCCCCGAGAAGGTGGAAGTTTCTCTCCCATCTCCAACTCCTTCAAGAGATCCAAGCACGAGTGGATACAGCATAGAAGCACCAAAGAACCCATTTACGCAGCAAAATTTAGCACATGATAGAAGAACTTTCAGGAGCTCTGCTTCAATTGCAACTACCAACTTATCATCTCAGATTCCGGCAACTAGCACTACAGTAAGACAACATCATACATTTGTTCCATTTTCAAAGCAGCTCAACGGCACAACAGCATCTCCATATTCACTACCTCCGGCAACTAATATTATTCCCGAAAAACAACCACTTCACTCCCACTCTTCCGTGTATGTACAAACACCATTCTCTGATAGAGGTTTAGCCATGAAGAACACGATCACTGCAGATGTATCTCCAGTTGGTGCACATTCAACACATATAGCAATGCGGGCTGATGGCATAAATAACATAAAACCAGCAGTACCTAATTCTAGTATGCAACAAGAGGGTTTGTCTAATTCATTCCCACAATCCTTCACGTTGAGCTCACCAACAACATCACGCTCAGCCGCACAACAGATACATGCACATATGATGCCCAACCAGCCCCATTTCATTGAACCTTCATATCATAACCCTGTCCATCCCTATCAACCACAATTCGAAAAATCAGATCCCATGTCAGATTTGCAAAGAGTTAGGCAGGATATACCACTGAGTTATCATTCTCAGCAAAATCATAACAACTATAACTCGTTGGTTGGGGGATCCATGCAATCTGGTTCGTGGGATAGAAACAATCATGAAAGGGAGGGATTTGAATCATGGAGTCCACACGATAGTCCAACTAGGAATCCTAGGTATGTTCAAGGTAGGAATCCCCCAGAGTCCAGAATGAATAATGTAAGAAATCATAGACCTGAATGGTCAAGGCAGCGAGGTTCTTCTGGACACTGGGACCGTGGTAGGAATGAGAATAGAAAATGGCATGATCAGAGACGGTGA 3069 0.4239 MMELWNDGLSELEIGSSVDSIQKFLGSQRELLHSQIDQFQEIVVTQCKLTGVNPLSQEMAAGALSIQIGKRPRDLLNPKAVNYMQSVFSIKDAISKKESREISALFGVTVTQVRDYFTSQRSRVRKQVQLSKERALKSNSCAESLDVQINSDPVRSMNPAPLNSVGATNVEEASYSAQEAALSDLDDSDKQFVENIFGLMQKEETFCGQEKLLEWILTIRNFSVLLWFLTGGGAMTLANWLSKAAVEEQTSVLLLVLKVLCHLPLHKAHPAHISALLQSVNRLRFYRTSDISNRARVLLSKWSKLLTRNQAIKKPNGVKLSGDGRKEIILSQSIGQTIGPESWHFDVPEDILALSNEFSDDFRKPESQSVKLLLSSSDDYNKKHPLGVSSSQSRERRKVQLVEQPGSVSRSPQAARTGPVSQGRPMSADDIQKAKMRALFMQSKYGKTASKENKAKINSPSKSQTKQASIAVCSSKVPVPLKNEVDKKPLLLPSKTTNRPEAPNSKLKMDLKEPLWEKCKRVKIPWKTPAEVELKDTWRVGVGENSKEVHVQENRNHRDKESIYRTVQEMPPNPKEPWDLEMDYDDSLTLEIPIEQLPDGDGPEIVDESNQFETHAAAVQAVASSSSASNAATAEPDLELLAVLLKNPDLVFALTSGQVSNVSNEETLKLLDMIKRGTVNVGLSVNANGNPGNSAKAPEKVEVSLPSPTPSRDPSTSGYSIEAPKNPFTQQNLAHDRRTFRSSASIATTNLSSQIPATSTTVRQHHTFVPFSKQLNGTTASPYSLPPATNIIPEKQPLHSHSSVYVQTPFSDRGLAMKNTITADVSPVGAHSTHIAMRADGINNIKPAVPNSSMQQEGLSNSFPQSFTLSSPTTSRSAAQQIHAHMMPNQPHFIEPSYHNPVHPYQPQFEKSDPMSDLQRVRQDIPLSYHSQQNHNNYNSLVGGSMQSGSWDRNNHEREGFESWSPHDSPTRNPRYVQGRNPPESRMNNVRNHRPEWSRQRGSSGHWDRGRNENRKWHDQRR* 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0550 1022 CDD homeodomain 70 127 IPR001356 GO:0003677
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 446 470 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 687 731 - -
Tpr6g0550 1022 PANTHER HOMEOBOX PROTEIN LUMINIDEPENDENS 2 1022 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 383 428 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 404 420 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 444 470 - -
Tpr6g0550 1022 Gene3D - 69 137 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 953 1022 - -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 966 986 - -
Tpr6g0550 1022 SMART HOX_1 69 131 IPR001356 GO:0003677
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 708 731 - -
Tpr6g0550 1022 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Tpr6g0550 1022 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 2 1022 - -
Tpr6g0550 1022 SUPERFAMILY Homeodomain-like 70 131 IPR009057 -
Tpr6g0550 1022 MobiDBLite consensus disorder prediction 987 1022 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0550 11 732 Homeobox Transcription Factor Family AT4G02560 49.431 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0550 - - gmx:100806633 1373.22