Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0549 ATGTCAAATATTTCAGGTGATGAAGGAAGCTTCTCCTCAGGAAACAATGGAGAAGAAGTATATGATGAAAGTAAGCTGCAACAAGTGCAAAATAATCTCAATGACACAGATTCAGGACCATCTGGTGCTTCTAATAGCAATAGCTCAACTAATCAACAACAAATCAAGAAGAAAAGAAACCTTCCTGGAACACCAGATCCTAGTGCTGAAGTTGTTGCATTATCACCAACAACATTAATGGCAACAAATAGATTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGGGACCAAAATCTTCAGTTACACCGAAGAGGTCACAATCTTCCATGGAAACTTAGGCAAAGAACAAGCGCAGAGGTGAAGAAAAAGGTGTATGTCTGCCCTGAACCATCATGTGTCCATCATAACCCAGCTCGTGCATTAGGCGACCTTACTGGCATCAAAAAACATTTTAGCCGCAAACATGGCGAAAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCTGTTCAATCTGATTGGAAAGCACACCAGAAAACTTGTGGTACAAGGGAATACAAATGTGATTGTGGAACCATATTTTCTAGGAGAGATAGTTTTATAACTCACAGAGCTTTCTGTGATGCATTAACTGAAGAAAACAACAGAGTGAACCAAGGATTAACTAGTGGCATGCCACCAAATTTACAAAATCAAATGCATGATCCTATCTCTTCTATGCCTCTAAAACCAAATTCCAACACTTCATCAGAATTAAACAATGAATATGACCCTAAAAACTCACTAAAATCTCCAACTCAAGAACATGTTCCAACACCATTTAGATCAAATAATGCATGTGGTGGCATGTTTTCCACTAGTGCAGGTGCACTTTTTGGAGGCCCAAAAACCTTACCTCCCTCTTCTTCATCCCTTCAACTCAGTTCCAATAGTTTCAATTACTTCAATGACAATAAAACCGGAGGACTAATTTGTGGCTCGGCTCAAATGTCAGCAACCGCTTTATTACAAAAAGCGGCACAAATAGGTTCTACTTCAAGCAATAGTGGTAATTGTAATTCCTCCATGATGCAGAAAAGCTTTGTTAGTAGTATGATTAGTCCTAATCATGTTTCTGGTCCAATCATGATGAACCAACCCTCTTATGAACACTTTAATCCACTAAACCATAATGATTTAACTAACATGGCTGGTGTTAGTGGTGGTGGAGCATTCACAAATCAACTATTTCAAAACAATACTAATGATATTGGAATGTTTAGTCAAATATCAATGGGAAATGATCAAAGTAGTGGATTGATGAAGAATATGGCAGAGAGTAACCAATTAGTTCATGATTTCTTGGGAATTGGTGGTTCAAATTCAAGTTTGCATGAAACACAACAGCAACAAAGATTGGAAGCATTAACTCATCAGAGGTTGGAAATTATGAATGATTTTCATCATCATCAGCATCATCTTCCACATGATGATTCTGTCATGGAGAAATCAATTTGGGATGTTTGA 1512 0.377 MSNISGDEGSFSSGNNGEEVYDESKLQQVQNNLNDTDSGPSGASNSNSSTNQQQIKKKRNLPGTPDPSAEVVALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSAEVKKKVYVCPEPSCVHHNPARALGDLTGIKKHFSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMPPNLQNQMHDPISSMPLKPNSNTSSELNNEYDPKNSLKSPTQEHVPTPFRSNNACGGMFSTSAGALFGGPKTLPPSSSSLQLSSNSFNYFNDNKTGGLICGSAQMSATALLQKAAQIGSTSSNSGNCNSSMMQKSFVSSMISPNHVSGPIMMNQPSYEHFNPLNHNDLTNMAGVSGGGAFTNQLFQNNTNDIGMFSQISMGNDQSSGLMKNMAESNQLVHDFLGIGGSNSSLHETQQQQRLEALTHQRLEIMNDFHHHQHHLPHDDSVMEKSIWDV* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0549 503 MobiDBLite consensus disorder prediction 1 67 - -
Tpr6g0549 503 ProSitePatterns Zinc finger C2H2 type domain signature. 87 107 IPR013087 -
Tpr6g0549 503 Gene3D Classic Zinc Finger 139 219 - -
Tpr6g0549 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 85 107 IPR013087 -
Tpr6g0549 503 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 484 - -
Tpr6g0549 503 Pfam Zinc finger, C2H2 type 85 107 IPR013087 -
Tpr6g0549 503 Gene3D Classic Zinc Finger 63 131 - -
Tpr6g0549 503 MobiDBLite consensus disorder prediction 1 59 - -
Tpr6g0549 503 SMART c2h2final6 161 181 IPR013087 -
Tpr6g0549 503 SMART c2h2final6 85 107 IPR013087 -
Tpr6g0549 503 SMART c2h2final6 126 156 IPR013087 -
Tpr6g0549 503 MobiDBLite consensus disorder prediction 246 272 - -
Tpr6g0549 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 484 - -
Tpr6g0549 503 SUPERFAMILY beta-beta-alpha zinc fingers 84 182 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0549 Tpr-Chr6 4456389 4459348 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0549 32 349 IDZ Gene Family AT3G50700 53.757 8.00e-113 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr6g0549 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0549 - - cam:101505978 740.725