Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0525 ATGAGTAGACGCTCCAGCAGAACCGTCTATGTTGGTAATCTACCTGGCGATATCCGTGAAAGAGAAGTTGAAGATTTGTTTATGAAGTATGGACATATAACTCACATTGACCTAAAGGTTCCGCCAAGGCCCCCTGGTTATGCATTTGTAGAGTTTGAAGATTATCAAGATGCTGAGGATGCAATTCGCGGGCGTGATGGCTATGATTTTGATGGGCACCGGTTACGGGTGGAGGCTGCTCATGGTGGTCGTGGTACTGGTAATTCATCTTCAAGAGATCGATATAGTAGTCATACCAATGGCCGGGGTGGACGTGGAGTATCCAGACGTTCTGAATATCGCGTTCTAGTCAATGGGTTGCCCTCTTCTGCATCCTGGCAGGATCTTAAGGATCACATGCGAAAAGCAGGGGATGTTTGCTTTTCACAAGTTTTTCATGATGGAAGGGGTACTACTGGGATCGTGGATTACACAAACTACGATGATATGAAATATGCTATCAAAAAGCTTGATGACTCTGAGTTCCGAAATGCATTTTCCAAGTCTTATGTTCGAGTGAGGGAGTATGATTCAAGGCGGGACTCTAGAAGTCCGAGTAGAGGAAGAAGCTACAGTCGCAGCCGTAGTCGCAGCCGTAGCCGTAGCCGCAGTCCAGGCCATAGCCAAAGCAAATCTCCTAAGGGTAAATCCTCACAACGTTCGCCAGCTAAATCTCCAGCAAGATCAGTTTCTCGTTCTCGCTCAAGATCTAGATCCCGTTCTTTATCAGGATCACGTTCAAGGTCTAGGTCTCCATTACCTCCGCGTAATAAAAGCCCCAAAAAACGCAGTGCTAGCAGGAGTCCAAGTAGGAGCAGGAGCCGGAGCAAGAGTTTGTCCAGATGA 885 0.4723 MSRRSSRTVYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDYQDAEDAIRGRDGYDFDGHRLRVEAAHGGRGTGNSSSRDRYSSHTNGRGGRGVSRRSEYRVLVNGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSKSYVRVREYDSRRDSRSPSRGRSYSRSRSRSRSRSRSPGHSQSKSPKGKSSQRSPAKSPARSVSRSRSRSRSRSLSGSRSRSRSPLPPRNKSPKKRSASRSPSRSRSRSKSLSR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0525 294 Gene3D - 2 109 IPR012677 -
Tpr6g0525 294 CDD RRM2_SF2_plant_like 113 188 - -
Tpr6g0525 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tpr6g0525 294 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Tpr6g0525 294 Gene3D - 112 190 IPR012677 -
Tpr6g0525 294 MobiDBLite consensus disorder prediction 79 110 - -
Tpr6g0525 294 MobiDBLite consensus disorder prediction 268 283 - -
Tpr6g0525 294 MobiDBLite consensus disorder prediction 203 217 - -
Tpr6g0525 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 191 IPR000504 GO:0003723
Tpr6g0525 294 MobiDBLite consensus disorder prediction 218 243 - -
Tpr6g0525 294 MobiDBLite consensus disorder prediction 186 201 - -
Tpr6g0525 294 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 284 - -
Tpr6g0525 294 CDD RRM1_SF2_plant_like 8 78 - -
Tpr6g0525 294 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 284 - -
Tpr6g0525 294 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Tpr6g0525 294 MobiDBLite consensus disorder prediction 84 104 - -
Tpr6g0525 294 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tpr6g0525 294 SMART rrm1_1 8 78 IPR000504 GO:0003723
Tpr6g0525 294 SMART rrm1_1 114 185 IPR000504 GO:0003723
Tpr6g0525 294 MobiDBLite consensus disorder prediction 186 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0525 Tpr-Chr6 4295283 4299825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0525 3 80 Eukaryotic Initiation Factors Gene Family AT3G11400 34.568 3.19e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0525 K12890 - gmx:100789847 345.895