Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0516 ATGGCTCGTTCTTTCGATAACGCTAAGGTTTTTTCTGCTACTGTTCTTGAAGGATTCTCCAACACTCTCACAAGGCCAAAGAATGTATACAAGGATTTGGATGATGGGCGGCGGCGGTTTTTGCTTGAACTGGAATTTGTTCAATGCCTTGCTAATCCTGCCTACATCCATTATTTGGCTCAGAACCGATATTTTGAGGATGAAGCATTCATTGAGTACTTAAAGTATCTTCAGTATTGGCAACGTCCTGAATATATTAAGTTTATTATGTATCCTCACTGCCTCTATTTTCTTGAGCTTCTTCAGAATGCAAATTTTCGCAAAGCAATGGCACATCCTACCAATAAGGAATTGGTGCATAGACAGCAGTTCTATTTCTGGAAGAACCATAGGAACAATCGGCTAAAACACATTTTACCTAAACCACTTCCAATGCCATATGGTTCTGGTCTTGCAAAAAATGACACAAGGAATCCTACGGTTGGTAAAAGGAAAAGAAAGTGA 504 0.3948 MARSFDNAKVFSATVLEGFSNTLTRPKNVYKDLDDGRRRFLLELEFVQCLANPAYIHYLAQNRYFEDEAFIEYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNANFRKAMAHPTNKELVHRQQFYFWKNHRNNRLKHILPKPLPMPYGSGLAKNDTRNPTVGKRKRK* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0516 167 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 18 147 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tpr6g0516 167 Pfam SOH1 38 129 IPR008831 GO:0003712|GO:0006355|GO:0016592
Tpr6g0516 167 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 25 127 IPR038089 -
Tpr6g0516 167 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 18 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0516 Tpr-Chr6 4221986 4223980 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Tpr6g0516 Med31 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0516 K15153 - gmx:100527879 251.521