Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0509 ATGGCTTCTGACCAAAACCTTCAAGAAAAGTATGCCCTTAACGCCAAAGTCATGGTAGGTTCTTCAGTCCTTCTCTTCATACTCATAATCATCGTCGTTCTCTTTCGCACTTATATCTACCTCTGCCACCATCGCCGCAACCGCCACCGTCAATTCTCTCAACAATCTCTTACAACCACCACTTTCAAAGAAGAAAAACTCGACCCTTCCGTTCTCAAATCCATTCCTACTTTCATCTTTTCAACCTCCGCAAGCCACCGCACTGTCCTCGACTGCGCCGTATGCTTATCGGAGTTCACCGACGGTGATGTGTGTCGTACGCTTCCTAATTGTAAACACCATTTTCATTCTCAGTGTATTGATATGTGGCTCGGTTCTCATTCCAATTGTCCTCTCTGCCGAACTCCGGTTCAACCGGTGACGGTTCAGACTCATACTGAACCGTGCTCTGTTTCGGGTTTACAAGAACCGGGTGAAGGTTGTTCGAGTTTTCTTGAACCGGTTGGGTGTCCGAGAAAGCCTTTTAGTGTAATTGTAGAGTTACCTTACCACCAGAGATAG 561 0.4652 MASDQNLQEKYALNAKVMVGSSVLLFILIIIVVLFRTYIYLCHHRRNRHRQFSQQSLTTTTFKEEKLDPSVLKSIPTFIFSTSASHRTVLDCAVCLSEFTDGDVCRTLPNCKHHFHSQCIDMWLGSHSNCPLCRTPVQPVTVQTHTEPCSVSGLQEPGEGCSSFLEPVGCPRKPFSVIVELPYHQR* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0509 186 CDD RING-H2_EL5_like 91 134 - -
Tpr6g0509 186 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Tpr6g0509 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 148 - -
Tpr6g0509 186 SUPERFAMILY RING/U-box 91 140 - -
Tpr6g0509 186 Pfam Ring finger domain 91 134 IPR001841 -
Tpr6g0509 186 SMART ring_2 92 133 IPR001841 -
Tpr6g0509 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 143 IPR013083 -
Tpr6g0509 186 PANTHER RING-H2 FINGER PROTEIN ATL64 8 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0509 Tpr-Chr6 4181215 4182076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0509 4 179 Rapid Response to Elicitors AT3G16720 37.037 3.09e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0509 - - cam:101488632 206.838