Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0507 ATGGCTTCTTCTTCTTCCAAGTTATGTAATCCCCTCTCAATATTTCTTATTCTTTCATTTGCTTCTATAGCATTTTCCGACACCGTGACTAGTCCAAATCCAATTACGCCTACTTCTCCGGGCACGGCGTGCAAATCCACCCCTGACCCAACCTATTGCAAATCCATTCTTCCTCCTCAAAATGGCAATGTTTATGATTATGGTCGATTCTCGGTCAAAAAATCTCTATCACAATCCCGAAAATTCTCGAACCTAATCAACCAATATCTCCAACGTCGCTCAAAACTTTCCACCACCGCTATACGAGCGCTACAAGATTGTCAATCACTTAGCGACCTCAACTTTGATTTCCTTTCGAGTTCTTTTCTAACCGTTAACAAAACAACTAAGTTTCTTCCAAGTTTACAAGCCGAAAACATCCAAACATTACTTAGCGCGATTCTGACAAACCAACAAACATGTTTAGATGGTCTTAAAGACACTTCCTCCGCTTGGAGTTTTAGAAATGGACTCACAGTTCCACTTTCTAATGACACCAAACTCTATAGTGTTTCTCTTGCTTTCTTTACTAAAGGTTGGGTTCCTAAAACCAAACCAAAAACCTCCTTTCATAATAATGTGCATCCCTCATTTAAAAACGGCCGTTTGCCACTTAAGATGTCGAGCAAGACACGTGCGATTTACGAATCAGTTAGTCGTAGAAAGCTTCTTCAAAGTAATCAAGTTGGTGAGGATGTTGTGGTGAGAGATATTGTGACAGTTAGTCAAGATGGAAGTGGAAACTTTACGACGATTAATGATGCTATTGCTGCAGCTCCAAATAAATCTGTTTCTACTGATGGTTATTTCTTGATCTATGTTACTGCTGGTGTTTATGAAGAGTATGTTAATATTGATAAGAAAAAGACTTATTTGATGATGATTGGAGATGGTATCAACAAGACTATCATCACCGGAAATCATAGTGTTGTCGATGGATGGACCACATTCGGCTCCCCAACTTTCGCTGTGGTTGGACAAGGATTCGTGGGTGTGAATATGACCATCCGTAACACCGCGGGTGCTATAAAGCACCAAGCAGTGGCACTTCGTAACGGGGCAGATTTATCGACCTTTTACAGTTGCAGTTTCGAAGGGTACCAAGACACATTATACACACATTCGCTAAGACAATTCTATAGAGAATGTGACATATACGGTACAGTTGATTTCATATTCGGAAATGCTAAGGTTGTTTTCCAAAATTGTAACCTTTATCCTCGTCTTCCAATGAGTGGACAATTCAATGCAATCACAGCACAAGGTAGAACAGATCCAAATCAAGACACAGGTACTTCCATTCACAATTGTACAATTAAAGGTGCAGATGATTTAGTTTCTAGTAATGGTAAAGTTGCAACATATTTGGGTAGACCATGGAAAGAGTATTCAAGAACAGTTTATATGCAAACATTTATGGATAATGTGATTAATGTTGCTGGTTGGCGTGCTTGGGATGGAGAATTTGCATTAAGTACATTATATTATGCTGAGTTTAATAATACTGGACCAGGGTCTAATACTGATGGAAGAGTGACATGGCAAGGTTATCATGTGATTAATGCTAGTGATGCTGCTAATTTTACTGTGGCAAATTTCTTGCTTGGTGATGATTGGTTACCTCAGACAGGGGTGTCTTACACTAATAACTTGATTAATATTTAA 1704 0.3903 MASSSSKLCNPLSIFLILSFASIAFSDTVTSPNPITPTSPGTACKSTPDPTYCKSILPPQNGNVYDYGRFSVKKSLSQSRKFSNLINQYLQRRSKLSTTAIRALQDCQSLSDLNFDFLSSSFLTVNKTTKFLPSLQAENIQTLLSAILTNQQTCLDGLKDTSSAWSFRNGLTVPLSNDTKLYSVSLAFFTKGWVPKTKPKTSFHNNVHPSFKNGRLPLKMSSKTRAIYESVSRRKLLQSNQVGEDVVVRDIVTVSQDGSGNFTTINDAIAAAPNKSVSTDGYFLIYVTAGVYEEYVNIDKKKTYLMMIGDGINKTIITGNHSVVDGWTTFGSPTFAVVGQGFVGVNMTIRNTAGAIKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAKVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQDTGTSIHNCTIKGADDLVSSNGKVATYLGRPWKEYSRTVYMQTFMDNVINVAGWRAWDGEFALSTLYYAEFNNTGPGSNTDGRVTWQGYHVINASDAANFTVANFLLGDDWLPQTGVSYTNNLINI* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0507 567 ProSitePatterns Pectinesterase signature 2. 398 407 IPR033131 -
Tpr6g0507 567 PANTHER PECTINESTERASE 26 563 - -
Tpr6g0507 567 SUPERFAMILY Pectin lyase-like 249 561 IPR011050 -
Tpr6g0507 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 191 IPR035513 -
Tpr6g0507 567 Pfam Pectinesterase 252 550 IPR000070 GO:0030599|GO:0042545
Tpr6g0507 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 190 IPR006501 GO:0004857
Tpr6g0507 567 Pfam Plant invertase/pectin methylesterase inhibitor 42 187 IPR006501 GO:0004857
Tpr6g0507 567 SMART PMEI_2 35 188 IPR006501 GO:0004857
Tpr6g0507 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 191 IPR035513 -
Tpr6g0507 567 CDD PMEI-like_3 42 193 - -
Tpr6g0507 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 26 563 - -
Tpr6g0507 567 Gene3D - 246 564 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0507 Tpr-Chr6 4175152 4177455 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0507 12 565 Carbohydrate Esterase AT4G02330 62.982 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0507 K01051 - gmx:100800971 939.102