Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0505 ATGACTTTGAGTTTCTCTGTAGATATTGCTGAGACAGCAATGCAAGATAATTGTTTTGAGGGGCTGGATAATCTTATCTTCACTCAATTTGTTAAATGCTCCATTGGCTTAAAAGGTGAGAGTGTGAGACTCATGACAATATTCTCAATTCAAAAATCCATCTTTCAATCCCATAAGTTTTTGAACTCATTGAACTTCTATCTTGGGTCTAGTACATTATCTAAAGAGACAAAAAATGTTATAAAAGATTGTTTATTCCTCTCTCAACTCACTTCACAATACTTGTCAAAATCCAATTACATTGCACTCAAAAACACTAATGAAACTTTCTACACTTCCCAAGTTGATGATACTCAAACCCTTCTTAGTGCAGTTATAACAAACCATCAAACATGTTTAGATGGACTAATGACCGTGGCTAATTCCAATTTAACCATAAAAAATTATCTTATTAGCCAACTCTCTAATGATAACAAACTCCATAGTGTTTCACTTGGTTTGTTCACAAAAGGTTGGATGCATGAAAAAAAGAACAAGACATTATGGAATTCTAGAGGGTGGCATTCTAGTAATTTCAGAAATGGTAGATTACCTTTGAAGATGTCAAATAGAACAAGAGCCATTTATGATTCATCAAGAGGCAGAGGAAAAAAACATGATGATGATTATGATGGTGATGATGATGATGAAGGTGGTGTTTTGGTTAGGGACATTGTTGTTGTTAGTAAAGATGGGAGTGGAAACTTTACAACTATCAATGATGCTGTTGCTGCTGCTCCAAATAACACTATTAATGCAACAAATGGATATTTCTTGATTTTTATCAAGGAGGGTATCTATGAGGAATATGTGTCTATCCCTCAAAACAAGGCATATTTGATGATGATCGGAGACGGAATCAATCAAACAGTTATCACCGGCAACCACAGTGTTGGTGACGGATGGACAACGTTTAATTCCCCAACATTTGCTGTGGTAGCACCGGGGTTTGTAGCCGTTAACATAACATTTCGGAACACCGCTGGACCGAGCAAATTCCAAGCAGTTGCAATGAGAAGTGGAGCAGACATGTCCGCTTTCTATCGTTGCAGCTTTGAAGGGTACCAAGATACTCTCTATACACATTCACTAAGACAATTTTATAAAGAATGTGATATTTATGGAACAATTGATTTCATATTTGGAAACGCCGCAGTTGTTTTGCAAAACTGCAACATATATCCTCGTCTTCCTTTACCAGGACAGTTCAATCCGATTACTGCTCAAGGACGAACCGATCCAAATCAAAACACAGGTATTTCCATTCACAATTGCACTATTAAACCAGCTGAAGATTTAGTTCCAAGTGTTGGTATTGTGAAAACTTACCTTGGGAGACCATGGAAAGAGTATTCAAGAACTGTTGTTATGCAATCTTTGTTGGAGAATTTGATAGAGCCAAGTGGTTGGTCTATATGGAGTGGTGATTTTGCACTCTCTACTTTGTATTATGCAGAGTATGATAACAGAGGAGCTGGTGCAAATACTTCTAATAGAGTTACATGGCAAGGGTACCATGTGATTAATGCTACTGATGCTGCTAATTTTACAGTTGATAATTTTCTGCATGGGAATGATTGGTTGCCTCAAATTGGAGTTCCTTATATTAATTGA 1653 0.3678 MTLSFSVDIAETAMQDNCFEGLDNLIFTQFVKCSIGLKGESVRLMTIFSIQKSIFQSHKFLNSLNFYLGSSTLSKETKNVIKDCLFLSQLTSQYLSKSNYIALKNTNETFYTSQVDDTQTLLSAVITNHQTCLDGLMTVANSNLTIKNYLISQLSNDNKLHSVSLGLFTKGWMHEKKNKTLWNSRGWHSSNFRNGRLPLKMSNRTRAIYDSSRGRGKKHDDDYDGDDDDEGGVLVRDIVVVSKDGSGNFTTINDAVAAAPNNTINATNGYFLIFIKEGIYEEYVSIPQNKAYLMMIGDGINQTVITGNHSVGDGWTTFNSPTFAVVAPGFVAVNITFRNTAGPSKFQAVAMRSGADMSAFYRCSFEGYQDTLYTHSLRQFYKECDIYGTIDFIFGNAAVVLQNCNIYPRLPLPGQFNPITAQGRTDPNQNTGISIHNCTIKPAEDLVPSVGIVKTYLGRPWKEYSRTVVMQSLLENLIEPSGWSIWSGDFALSTLYYAEYDNRGAGANTSNRVTWQGYHVINATDAANFTVDNFLHGNDWLPQIGVPYIN* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0505 550 SMART PMEI_2 9 167 IPR006501 GO:0004857
Tpr6g0505 550 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Tpr6g0505 550 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 41 549 - -
Tpr6g0505 550 PANTHER PECTINESTERASE 41 549 - -
Tpr6g0505 550 CDD PMEI-like_3 47 172 - -
Tpr6g0505 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 170 IPR035513 -
Tpr6g0505 550 Gene3D - 234 550 IPR012334 -
Tpr6g0505 550 Pfam Pectinesterase 239 538 IPR000070 GO:0030599|GO:0042545
Tpr6g0505 550 Pfam Plant invertase/pectin methylesterase inhibitor 71 155 IPR006501 GO:0004857
Tpr6g0505 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 170 IPR035513 -
Tpr6g0505 550 SUPERFAMILY Pectin lyase-like 236 549 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0505 Tpr-Chr6 4152690 4163769 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0505 42 550 Carbohydrate Esterase AT4G02330 60.461 0.0 625
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0505 K01051 - gmx:100813051 707.983