Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0504 ATGAGAGAAAAAACAGAACCATTGCTGCTTCTACTACCAATTTTACTTCTACTATTTTCAGTAACCAATTCATCAGAATTACCAACACAAAACCATCTCCAAGTTGCACATTCAACATGTGAAGGAACACTCTATCCAAACCTTTGTGTCTCAACCTTATCCACATTCCCAGATCTTACCTCAAAAACAGTCCCACAAGTCATTTGCTCTGTCCTTAACTTCACCATAAAGGAAGTTAAATTATCATCTAACAACTGCACCGACCTACGATATCGTAGCAGAAGTGTACAAAGCATACTTGACAAAAGAGCCCTCGACGATTGTGTCAATTTATTTGACACAACCGTCGAAGAGCTCAAATCAACAATTGCTGATCTCTCTCAAAATCAAACCACAATAGCTTCTGACAGTAAACGTGACTGTCAAACTCTGCTAAGCGGCGCAATGACGAATGTGTACACATGTTTGGATGGTTTTGCTTATAGTAAATCCAAGTTAAGAAGCAAAATTGAGAATGGTTTGAATGATATTTCTAATCATGTTAGTAATTCACTTTCCTTGTTGAAGAAAGTTCCTGGAGTTAAGTCTAAAACTTCAAAGTCTGAGGCTTTTCCTGAATATGGTAAGGTGAAAGACGGGTTTCCGACGTGGGTTTCCCCGAAAGATAGGAAGCTGTTACAAACCGCAACGAATCAGACTAACTTCAATCTTGTTGTTGCTAAAGATGGCTCAGGCCATTTTACTACTATAGGAGAAGCAATTGCTGCAGCTCCAAACTCGAGCGCAACTAGATTTTTGATACATATAAAAGCGGGGGCATACTTAGAGAATGTGGAAATTATAAGGAAGAAGACCAATTTGATGTTAGTTGGAGATGGAATTGGAAAGACAGTTGTGAAGGCTAGTAGAAATGTTGTAGATGGATGGACCACTTTCCAATCAGCTACATTTGCTGTTGTGGGAGATAATTTCATAGCCAAGGGAATAACCTTTGAGAACTCAGCTGGAGCAAGCAAACATCAAGCTGTGGCCTTGAGAAGTGGCGCCGATTTCTCAACCTTCTACCAATGCAGCTTTGTTGCTTACCAAGACACTCTATATGTCCATTCTCTCCGTCAATTTTACCGTGAATGTGATGTTTATGGCACCGTAGACTTCATCTTTGGCAATGCAGCCGTGGTTTTCCAAAATTGCAACCTATACGCACGCAAACCCGATCCAAACCAAAAGAATTTGTTCACTGCACAAGGTAGAGAAGATCCTAACCAAAACACTGGAATTTCGATTATAAACTCTAAAGTTACGGCTGCTTCGGATTTGATTCCAGTAAAATCAACGTTCAAGACTTACCTCGGTCGTCCGTGGAAAAAATATTCAAGAACAGTTTATCTTAATTCTTTTTTAGACGATTTGATAGATCCGGCAGGATGGTTAGAATGGAACGGAACATTTGCGTTGGATACATTGTACTATGGCGAGTATAAGAATCGGGGTCCGGGCTCGAATACGACAGCTAGAGTTAAGTGGCCGGGTTATAAAGTGATTACAAACACTACTGAGGCAAGTCAGTTTACTGTTAGGCAGTTTATTCAAGGCAATGAATGGTTGAACTCTACTGGAATTCCATTTTTCCCTGATTTGAGTTGA 1647 0.4007 MREKTEPLLLLLPILLLLFSVTNSSELPTQNHLQVAHSTCEGTLYPNLCVSTLSTFPDLTSKTVPQVICSVLNFTIKEVKLSSNNCTDLRYRSRSVQSILDKRALDDCVNLFDTTVEELKSTIADLSQNQTTIASDSKRDCQTLLSGAMTNVYTCLDGFAYSKSKLRSKIENGLNDISNHVSNSLSLLKKVPGVKSKTSKSEAFPEYGKVKDGFPTWVSPKDRKLLQTATNQTNFNLVVAKDGSGHFTTIGEAIAAAPNSSATRFLIHIKAGAYLENVEIIRKKTNLMLVGDGIGKTVVKASRNVVDGWTTFQSATFAVVGDNFIAKGITFENSAGASKHQAVALRSGADFSTFYQCSFVAYQDTLYVHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYARKPDPNQKNLFTAQGREDPNQNTGISIINSKVTAASDLIPVKSTFKTYLGRPWKKYSRTVYLNSFLDDLIDPAGWLEWNGTFALDTLYYGEYKNRGPGSNTTARVKWPGYKVITNTTEASQFTVRQFIQGNEWLNSTGIPFFPDLS* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0504 548 Pfam Plant invertase/pectin methylesterase inhibitor 37 187 IPR006501 GO:0004857
Tpr6g0504 548 SMART PMEI_2 31 187 IPR006501 GO:0004857
Tpr6g0504 548 ProSitePatterns Pectinesterase signature 2. 380 389 IPR033131 -
Tpr6g0504 548 PANTHER PECTINESTERASE 28 544 - -
Tpr6g0504 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 37 191 IPR035513 -
Tpr6g0504 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 193 IPR035513 -
Tpr6g0504 548 Gene3D - 230 547 IPR012334 -
Tpr6g0504 548 CDD PMEI-like_3 38 193 - -
Tpr6g0504 548 Pfam Pectinesterase 236 533 IPR000070 GO:0030599|GO:0042545
Tpr6g0504 548 PANTHER PECTINESTERASE 28 544 - -
Tpr6g0504 548 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 190 IPR006501 GO:0004857
Tpr6g0504 548 SUPERFAMILY Pectin lyase-like 232 545 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0504 Tpr-Chr6 4147175 4152900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0504 60 547 Carbohydrate Esterase AT4G02320 55.378 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0504 K01051 - gmx:100813592 829.32