Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0499 ATGGTCTCTCTCAAACTCCAAAAGCGTCTCTCTTCCAGCGTCCTCAAGTGCGGTAGAGGCAAGGTTTGGCTCGATCCAAATGAAGTCAATGAAATCTCCATGGCCAATTCTCGCCAAAACATTAGGAAGCTGGTGAAGGATGGGTTTATCATCAGGAAACCTACCAAGATTCATTCCCGATCACGTGCTCGTCGTATCAAGGAAGCTAAGCAAAAAGGAAGACACTCTGGATATGGTAAGAGGAAGGGTACAAGGGAGGCAAGGCTTCCAACAAAGATCCTTTGGATGAGGAGAATGCGCGTGCTTAGACGCTTGCTCCGCAAGTACCGTGAGACTAAGAAGATTGACAAGCACATGTATCATGACATGTATATGAAGGTTAAGGGTAATGTCTTTAAGAACAAGAGAGTTCTTATGGAAAGTATCCACAAGTCTAAAGCCGAGAAGGCAAGAGAGAAGACCCTATCTGATCAGTTCGAGGCCAAGCGTGCCAAGAACAAGGCCAGCCGAGAAAGAAAGCATGCTCGGAGGGAGGAGCGTTTCGCTCAAGGTCCTGGAGGAGAGAAGCCAGCAGCTGCACCTGCTGCTGCGCCTGCTGCAGCAGCACAGCCAACCCAAGCATCAAAGAAATCGAAGAAGGCAGCAGCAGTCTGA 654 0.4893 MVSLKLQKRLSSSVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRIKEAKQKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRETKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERFAQGPGGEKPAAAPAAAPAAAAQPTQASKKSKKAAAV* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0499 217 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tpr6g0499 217 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Tpr6g0499 217 MobiDBLite consensus disorder prediction 144 217 - -
Tpr6g0499 217 MobiDBLite consensus disorder prediction 60 79 - -
Tpr6g0499 217 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Tpr6g0499 217 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Tpr6g0499 217 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
Tpr6g0499 217 PANTHER 60S RIBOSOMAL PROTEIN L19 1 213 IPR039547 GO:0003723|GO:0003735|GO:0022625
Tpr6g0499 217 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tpr6g0499 217 Gene3D - 57 185 - -
Tpr6g0499 217 MobiDBLite consensus disorder prediction 60 85 - -
Tpr6g0499 217 PANTHER RIBOSOMAL PROTEIN L19 1 213 - -
Tpr6g0499 217 MobiDBLite consensus disorder prediction 144 184 - -
Tpr6g0499 217 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0499 Tpr-Chr6 4110887 4112936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0499 1 213 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 83.099 3.22e-126 353