Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g0488 ATGGAAGATTCTGAACCCAAATCCGCTGAAAACAACCAACAAACTGAACAAGTGTGCAGTTTTTTCCGAAAACCAGTTAATAAGAAGAATATAAGGAAGAGAACTATTGATAATGAAGATAATGAGGATGATTCGAATAATGAAGAATCGTTGATGCATGTTCAGAAAAAGAATACAAAGACTGATAATAAGCTGTTCTTTTCCTCCGGCTCTTCGAAAAGCTCTGCATCTTCTGAACAGAAGGAAGAATCTGAGAAACATGGCTTTCATTTTGAGTCATCCAAAGAGATTCAAGTTCAACATGACAGCAAAGCAACAGCAACTCTTGAGACTGAGACTGATTTTTCGAATGATGCTCGTGCTAGGCGTGAAAGAGCTCTTAAGCAAGCATCGGAGACTCTTAAGGGAAAGGGAACTGGCTCCGAAGATGGAAAATTATACAAGGGAATGAATAATTACACAGATCATAAAGCTGGATTTCGGAGAGAGCACACAATTTCTGGTGAAAAGGCTGGCGGCTCACACGGTCCTCTTAGGGCTTCGGCTCATATAAGAGTGTCGGCTAGGTTTGATTATCAGCCTGATATATGTAAAGATTATAAGGAGACTGGGTACTGTGGTTACGGTGATTCGTGTAAGTTTATGCATGATCGAGGGGATTACAAATCTGGGTGGCAGATGGAGAAGGAATGGGAAGAAGCCGAGAAAGAAAGGAGGATGCGATTGGCTGCAGGTGAGGATGCGGAAGAGGAGGGTGCCAATTTGAACGATGATGAAGATGACGACGATGATGCATTACCATTTGCATGTTTCATTTGTAGAAATCCATTCGTGGATCCTGTCTCAACGAAGTGCAAACACTACTTTTGCGAGCATTGTGCATTGAAGCATCATGCAAAGAATAAGAAGTGTTTTGTTTGCAACCAGCCAACGCTTGGTATTTTTAACGTTGCTCACGAGATACGGAAGAAGATGGCTGAGGATAAATAA 990 0.4162 MEDSEPKSAENNQQTEQVCSFFRKPVNKKNIRKRTIDNEDNEDDSNNEESLMHVQKKNTKTDNKLFFSSGSSKSSASSEQKEESEKHGFHFESSKEIQVQHDSKATATLETETDFSNDARARRERALKQASETLKGKGTGSEDGKLYKGMNNYTDHKAGFRREHTISGEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQMEKEWEEAEKERRMRLAAGEDAEEEGANLNDDEDDDDDALPFACFICRNPFVDPVSTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDK* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g0488 329 SMART ring_2 270 307 IPR001841 -
Tpr6g0488 329 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 192 217 IPR000571 GO:0046872
Tpr6g0488 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 327 IPR013083 -
Tpr6g0488 329 Gene3D - 189 223 - -
Tpr6g0488 329 MobiDBLite consensus disorder prediction 100 114 - -
Tpr6g0488 329 PANTHER ZINC FINGER PROTEIN 183 10 328 IPR039971 -
Tpr6g0488 329 Pfam Zinc finger, C3HC4 type (RING finger) 269 311 - -
Tpr6g0488 329 MobiDBLite consensus disorder prediction 1 120 - -
Tpr6g0488 329 MobiDBLite consensus disorder prediction 78 99 - -
Tpr6g0488 329 ProSitePatterns Zinc finger RING-type signature. 285 294 IPR017907 -
Tpr6g0488 329 CDD RING-HC_RNF113A_B 268 308 - -
Tpr6g0488 329 SUPERFAMILY CCCH zinc finger 190 222 IPR036855 GO:0046872
Tpr6g0488 329 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 10 328 - -
Tpr6g0488 329 MobiDBLite consensus disorder prediction 61 77 - -
Tpr6g0488 329 SUPERFAMILY RING/U-box 269 312 - -
Tpr6g0488 329 SMART c3hfinal6 191 218 IPR000571 GO:0046872
Tpr6g0488 329 ProSiteProfiles Zinc finger C3H1-type profile. 191 219 IPR000571 GO:0046872
Tpr6g0488 329 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g0488 Tpr-Chr6 4017198 4019060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g0488 2 329 C2H2 Transcription Factor Family AT1G01350 68.598 6.16e-164 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr6g0488 zf-C3HC4_3 3.3e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g0488 K13127 - gmx:100817146 508.834